Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Msx1P13297 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Msx1P13297 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Msx1P13297 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Msx1P13297 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Msx1P13297 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Msx1P13297 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
Msx1P13297 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Msx1P13297 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Msx1P13297 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Msx1P13297 Gm30023-201ENSMUST00000197970 889 ntBASIC21.95■■□□□ 1.1
Msx1P13297 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
Msx1P13297 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Msx1P13297 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Msx1P13297 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.94■■□□□ 1.1
Msx1P13297 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Msx1P13297 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Msx1P13297 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
Msx1P13297 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
Msx1P13297 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
Msx1P13297 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
Msx1P13297 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Msx1P13297 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Msx1P13297 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
Msx1P13297 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.92■■□□□ 1.1
Msx1P13297 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Msx1P13297 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Msx1P13297 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Msx1P13297 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
Msx1P13297 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC21.9■■□□□ 1.1
Msx1P13297 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.89■■□□□ 1.09
Msx1P13297 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
Msx1P13297 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
Msx1P13297 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Msx1P13297 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Msx1P13297 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Msx1P13297 Scarna2-201ENSMUST00000157560 414 ntBASIC21.88■■□□□ 1.09
Msx1P13297 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Msx1P13297 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Msx1P13297 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Msx1P13297 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Msx1P13297 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Msx1P13297 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Msx1P13297 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Msx1P13297 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Msx1P13297 Gm11687-201ENSMUST00000118911 886 ntBASIC21.87■■□□□ 1.09
Msx1P13297 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Msx1P13297 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.86■■□□□ 1.09
Msx1P13297 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Msx1P13297 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Msx1P13297 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
Msx1P13297 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Msx1P13297 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Msx1P13297 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.85■■□□□ 1.09
Msx1P13297 Gm12366-201ENSMUST00000121722 873 ntBASIC21.85■■□□□ 1.09
Msx1P13297 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.85■■□□□ 1.09
Msx1P13297 Gm9806-201ENSMUST00000051080 552 ntBASIC21.85■■□□□ 1.09
Msx1P13297 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.85■■□□□ 1.09
Msx1P13297 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Msx1P13297 Gm5786-201ENSMUST00000085368 882 ntBASIC21.85■■□□□ 1.09
Msx1P13297 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Msx1P13297 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Msx1P13297 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Msx1P13297 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Msx1P13297 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC21.84■■□□□ 1.09
Msx1P13297 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Msx1P13297 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Msx1P13297 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Msx1P13297 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Msx1P13297 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Msx1P13297 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Msx1P13297 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Msx1P13297 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Msx1P13297 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.83■■□□□ 1.09
Msx1P13297 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Msx1P13297 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Msx1P13297 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Msx1P13297 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.82■■□□□ 1.08
Msx1P13297 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Msx1P13297 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msx1P13297 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.81■■□□□ 1.08
Msx1P13297 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Msx1P13297 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msx1P13297 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Msx1P13297 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Msx1P13297 Gm4799-201ENSMUST00000095396 657 ntBASIC21.79■■□□□ 1.08
Msx1P13297 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Msx1P13297 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Msx1P13297 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Msx1P13297 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.78■■□□□ 1.08
Msx1P13297 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Msx1P13297 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Msx1P13297 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.76■■□□□ 1.07
Msx1P13297 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Msx1P13297 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msx1P13297 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Msx1P13297 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.75■■□□□ 1.07
Msx1P13297 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Msx1P13297 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Msx1P13297 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms