Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
Clk3O35492 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Clk3O35492 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Clk3O35492 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
Clk3O35492 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Clk3O35492 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Clk3O35492 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Clk3O35492 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Clk3O35492 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
Clk3O35492 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC21.88■■□□□ 1.09
Clk3O35492 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.88■■□□□ 1.09
Clk3O35492 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Clk3O35492 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Clk3O35492 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Clk3O35492 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Clk3O35492 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.86■■□□□ 1.09
Clk3O35492 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Clk3O35492 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Clk3O35492 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Clk3O35492 Gm6821-201ENSMUST00000107540 542 ntBASIC21.85■■□□□ 1.09
Clk3O35492 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
Clk3O35492 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.85■■□□□ 1.09
Clk3O35492 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Clk3O35492 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Clk3O35492 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Clk3O35492 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Clk3O35492 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Clk3O35492 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.83■■□□□ 1.08
Clk3O35492 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Clk3O35492 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Clk3O35492 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
Clk3O35492 Gm42809-201ENSMUST00000198429 1138 ntBASIC21.81■■□□□ 1.08
Clk3O35492 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Clk3O35492 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.81■■□□□ 1.08
Clk3O35492 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Clk3O35492 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Clk3O35492 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Clk3O35492 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Clk3O35492 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Clk3O35492 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.8■■□□□ 1.08
Clk3O35492 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Clk3O35492 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Clk3O35492 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Clk3O35492 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
Clk3O35492 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Clk3O35492 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21.79■■□□□ 1.08
Clk3O35492 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Clk3O35492 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Clk3O35492 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Clk3O35492 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Clk3O35492 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Clk3O35492 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Clk3O35492 Gm30023-201ENSMUST00000197970 889 ntBASIC21.78■■□□□ 1.08
Clk3O35492 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Clk3O35492 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Clk3O35492 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Clk3O35492 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Clk3O35492 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
Clk3O35492 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Clk3O35492 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Clk3O35492 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Clk3O35492 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Clk3O35492 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Clk3O35492 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Clk3O35492 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Clk3O35492 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Clk3O35492 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Clk3O35492 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.73■■□□□ 1.07
Clk3O35492 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Clk3O35492 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Clk3O35492 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Clk3O35492 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Clk3O35492 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
Clk3O35492 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Clk3O35492 Gm8503-201ENSMUST00000118131 455 ntBASIC21.72■■□□□ 1.07
Clk3O35492 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Clk3O35492 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
Clk3O35492 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Clk3O35492 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Clk3O35492 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Clk3O35492 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.7■■□□□ 1.06
Clk3O35492 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
Clk3O35492 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
Clk3O35492 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Clk3O35492 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.68■■□□□ 1.06
Clk3O35492 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.68■■□□□ 1.06
Clk3O35492 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.68■■□□□ 1.06
Clk3O35492 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Clk3O35492 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Clk3O35492 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Clk3O35492 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Clk3O35492 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Clk3O35492 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 118.3 ms