Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav11A0A0B4J1J9 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav11A0A0B4J1J9 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav11A0A0B4J1J9 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC15.88■□□□□ 0.13
Trav11A0A0B4J1J9 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Trav11A0A0B4J1J9 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Trav11A0A0B4J1J9 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Trav11A0A0B4J1J9 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav11A0A0B4J1J9 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Trav11A0A0B4J1J9 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Trav11A0A0B4J1J9 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav11A0A0B4J1J9 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav11A0A0B4J1J9 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav11A0A0B4J1J9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav11A0A0B4J1J9 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Trav11A0A0B4J1J9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav11A0A0B4J1J9 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC15.85■□□□□ 0.13
Trav11A0A0B4J1J9 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav11A0A0B4J1J9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Trav11A0A0B4J1J9 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Trav11A0A0B4J1J9 Il17rd-202ENSMUST00000223942 2186 ntBASIC15.85■□□□□ 0.13
Trav11A0A0B4J1J9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Trav11A0A0B4J1J9 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trav11A0A0B4J1J9 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Trav11A0A0B4J1J9 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC15.84■□□□□ 0.13
Trav11A0A0B4J1J9 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Trav11A0A0B4J1J9 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Trav11A0A0B4J1J9 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Trav11A0A0B4J1J9 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC15.83■□□□□ 0.12
Trav11A0A0B4J1J9 Gm20634-201ENSMUST00000090779 2956 ntBASIC15.83■□□□□ 0.12
Trav11A0A0B4J1J9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trav11A0A0B4J1J9 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trav11A0A0B4J1J9 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Trav11A0A0B4J1J9 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
Trav11A0A0B4J1J9 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trav11A0A0B4J1J9 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Trav11A0A0B4J1J9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trav11A0A0B4J1J9 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trav11A0A0B4J1J9 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Trav11A0A0B4J1J9 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Trav11A0A0B4J1J9 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trav11A0A0B4J1J9 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trav11A0A0B4J1J9 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trav11A0A0B4J1J9 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
Trav11A0A0B4J1J9 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trav11A0A0B4J1J9 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Trav11A0A0B4J1J9 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Trav11A0A0B4J1J9 Gm17641-201ENSMUST00000166328 2350 ntBASIC15.78■□□□□ 0.12
Trav11A0A0B4J1J9 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Trav11A0A0B4J1J9 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav11A0A0B4J1J9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav11A0A0B4J1J9 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
Trav11A0A0B4J1J9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Trav11A0A0B4J1J9 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Trav11A0A0B4J1J9 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Trav11A0A0B4J1J9 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Trav11A0A0B4J1J9 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Trav11A0A0B4J1J9 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Trav11A0A0B4J1J9 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Trav11A0A0B4J1J9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Trav11A0A0B4J1J9 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav11A0A0B4J1J9 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav11A0A0B4J1J9 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC15.76■□□□□ 0.11
Trav11A0A0B4J1J9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav11A0A0B4J1J9 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Trav11A0A0B4J1J9 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trav11A0A0B4J1J9 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trav11A0A0B4J1J9 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trav11A0A0B4J1J9 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trav11A0A0B4J1J9 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trav11A0A0B4J1J9 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Trav11A0A0B4J1J9 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Trav11A0A0B4J1J9 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Trav11A0A0B4J1J9 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trav11A0A0B4J1J9 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trav11A0A0B4J1J9 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms