Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trbv3A0A0A6YYE2 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv3A0A0A6YYE2 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv3A0A0A6YYE2 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Trbv3A0A0A6YYE2 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trbv3A0A0A6YYE2 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv3A0A0A6YYE2 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv3A0A0A6YYE2 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv3A0A0A6YYE2 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trbv3A0A0A6YYE2 A330041J22Rik-201ENSMUST00000150367 1825 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trbv3A0A0A6YYE2 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv3A0A0A6YYE2 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC17.92■□□□□ 0.46
Trbv3A0A0A6YYE2 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv3A0A0A6YYE2 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv3A0A0A6YYE2 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv3A0A0A6YYE2 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trbv3A0A0A6YYE2 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Gm42699-201ENSMUST00000198104 1657 ntBASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv3A0A0A6YYE2 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv3A0A0A6YYE2 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trbv3A0A0A6YYE2 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv3A0A0A6YYE2 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv3A0A0A6YYE2 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv3A0A0A6YYE2 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Gm26115-201ENSMUST00000175605 87 ntBASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Trbv3A0A0A6YYE2 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC17.87■□□□□ 0.45
Trbv3A0A0A6YYE2 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv3A0A0A6YYE2 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv3A0A0A6YYE2 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv3A0A0A6YYE2 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Trbv3A0A0A6YYE2 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv3A0A0A6YYE2 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv3A0A0A6YYE2 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv3A0A0A6YYE2 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
Trbv3A0A0A6YYE2 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv3A0A0A6YYE2 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv3A0A0A6YYE2 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv3A0A0A6YYE2 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv3A0A0A6YYE2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv3A0A0A6YYE2 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv3A0A0A6YYE2 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv3A0A0A6YYE2 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
Trbv3A0A0A6YYE2 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Trbv3A0A0A6YYE2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv3A0A0A6YYE2 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv3A0A0A6YYE2 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trbv3A0A0A6YYE2 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Trbv3A0A0A6YYE2 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trbv3A0A0A6YYE2 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Particl-201ENSMUST00000205370 1560 ntBASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Trbv3A0A0A6YYE2 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC17.81■□□□□ 0.44
Trbv3A0A0A6YYE2 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv3A0A0A6YYE2 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trbv3A0A0A6YYE2 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trbv3A0A0A6YYE2 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv3A0A0A6YYE2 Gm37847-201ENSMUST00000192163 1497 ntBASIC17.81■□□□□ 0.44
Trbv3A0A0A6YYE2 Gm31748-201ENSMUST00000194938 1497 ntBASIC17.81■□□□□ 0.44
Trbv3A0A0A6YYE2 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC17.8■□□□□ 0.44
Trbv3A0A0A6YYE2 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Trbv3A0A0A6YYE2 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv3A0A0A6YYE2 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trbv3A0A0A6YYE2 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trbv3A0A0A6YYE2 H3f3aos-201ENSMUST00000097448 2905 ntBASIC17.78■□□□□ 0.44
Trbv3A0A0A6YYE2 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trbv3A0A0A6YYE2 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trbv3A0A0A6YYE2 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms