Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Trav16d-dv11A0A075B617 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav16d-dv11A0A075B617 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Trav16d-dv11A0A075B617 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
Trav16d-dv11A0A075B617 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Trav16d-dv11A0A075B617 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Trav16d-dv11A0A075B617 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav16d-dv11A0A075B617 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav16d-dv11A0A075B617 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Trav16d-dv11A0A075B617 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC17.01■□□□□ 0.31
Trav16d-dv11A0A075B617 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Trav16d-dv11A0A075B617 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Trav16d-dv11A0A075B617 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Trav16d-dv11A0A075B617 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav16d-dv11A0A075B617 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17■□□□□ 0.31
Trav16d-dv11A0A075B617 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17■□□□□ 0.31
Trav16d-dv11A0A075B617 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Trav16d-dv11A0A075B617 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
Trav16d-dv11A0A075B617 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav16d-dv11A0A075B617 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav16d-dv11A0A075B617 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Trav16d-dv11A0A075B617 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav16d-dv11A0A075B617 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC16.98■□□□□ 0.31
Trav16d-dv11A0A075B617 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Trav16d-dv11A0A075B617 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav16d-dv11A0A075B617 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav16d-dv11A0A075B617 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Trav16d-dv11A0A075B617 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav16d-dv11A0A075B617 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC16.97■□□□□ 0.31
Trav16d-dv11A0A075B617 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Trav16d-dv11A0A075B617 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Trav16d-dv11A0A075B617 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Trav16d-dv11A0A075B617 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav16d-dv11A0A075B617 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Trav16d-dv11A0A075B617 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Trav16d-dv11A0A075B617 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav16d-dv11A0A075B617 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC16.95■□□□□ 0.3
Trav16d-dv11A0A075B617 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trav16d-dv11A0A075B617 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Trav16d-dv11A0A075B617 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Trav16d-dv11A0A075B617 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Trav16d-dv11A0A075B617 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC16.94■□□□□ 0.3
Trav16d-dv11A0A075B617 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
Trav16d-dv11A0A075B617 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav16d-dv11A0A075B617 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav16d-dv11A0A075B617 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Trav16d-dv11A0A075B617 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav16d-dv11A0A075B617 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav16d-dv11A0A075B617 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
Trav16d-dv11A0A075B617 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Trav16d-dv11A0A075B617 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC16.93■□□□□ 0.3
Trav16d-dv11A0A075B617 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Trav16d-dv11A0A075B617 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav16d-dv11A0A075B617 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav16d-dv11A0A075B617 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav16d-dv11A0A075B617 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav16d-dv11A0A075B617 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Trav16d-dv11A0A075B617 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Trav16d-dv11A0A075B617 AC124392.1-201ENSMUST00000225172 5324 ntBASIC16.91■□□□□ 0.3
Trav16d-dv11A0A075B617 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trav16d-dv11A0A075B617 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Trav16d-dv11A0A075B617 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Trav16d-dv11A0A075B617 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC16.9■□□□□ 0.3
Trav16d-dv11A0A075B617 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trav16d-dv11A0A075B617 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Trav16d-dv11A0A075B617 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Trav16d-dv11A0A075B617 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Trav16d-dv11A0A075B617 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav16d-dv11A0A075B617 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav16d-dv11A0A075B617 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC16.88■□□□□ 0.29
Trav16d-dv11A0A075B617 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav16d-dv11A0A075B617 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Trav16d-dv11A0A075B617 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trav16d-dv11A0A075B617 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trav16d-dv11A0A075B617 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
Trav16d-dv11A0A075B617 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
Trav16d-dv11A0A075B617 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trav16d-dv11A0A075B617 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Trav16d-dv11A0A075B617 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Trav16d-dv11A0A075B617 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms