Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RSL24D1P2-201ENST00000445584 366 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RPL21P103-201ENST00000479921 488 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MTAPP1-201ENST00000489154 819 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RPL30P11-201ENST00000495304 339 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 OR5H4P-201ENST00000510851 923 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 TBCAP3-201ENST00000512475 312 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AC004486.1-201ENST00000546846 233 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MIR4458-201ENST00000578872 75 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 CBX3P2-202ENST00000583365 535 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-6P-201ENST00000606623 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AC022709.1-201ENST00000615967 87 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 RNU6-356P-201ENST00000384140 107 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AC004965.1-201ENST00000413033 213 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MTCO3P4-201ENST00000419236 787 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MTCO3P30-201ENST00000426425 670 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 ELOCP6-201ENST00000429066 328 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MTND5P8-201ENST00000449817 1083 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 ELOCP12-201ENST00000458706 328 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AC087190.1-201ENST00000484462 480 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 SSR3-208ENST00000496050 579 ntTSL 4 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 GZMAP1-201ENST00000503054 631 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 SNX5P1-201ENST00000505757 1041 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 OR6C73P-201ENST00000546432 358 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 AL133393.1-201ENST00000603277 287 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 MIR4278-201ENST00000636094 69 ntBASIC2.51□□□□□ -2.01
SHANK3Q9BYB0 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 TAF9BP2-201ENST00000400856 499 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC009237.2-201ENST00000421358 284 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC073310.1-201ENST00000423226 1033 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 TRIM60P3Y-201ENST00000432201 673 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 SNORD108-201ENST00000459332 71 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 TOMM22P6-201ENST00000465035 409 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 OR9N1P-202ENST00000494289 481 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC008562.1-201ENST00000521763 330 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 CENPUP2-201ENST00000555897 1186 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC012414.2-201ENST00000559474 187 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC073387.2-201ENST00000604797 784 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC019159.1-201ENST00000605094 187 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AC025048.6-202ENST00000627667 438 ntBASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.5□□□□□ -2.01
SHANK3Q9BYB0 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 RNU6-40P-201ENST00000384254 107 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 MTND4P13-201ENST00000402078 1023 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 RNU2-37P-201ENST00000410695 177 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 MTND4P24-201ENST00000424002 397 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 RPL23AP7-203ENST00000449021 469 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 CABYRP1-201ENST00000465493 1045 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 GTF2IP9-201ENST00000502460 301 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 RNU6-751P-201ENST00000516382 101 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 RNU2-58P-201ENST00000516403 183 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AC090751.1-201ENST00000566966 267 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AC006270.2-201ENST00000578523 652 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AC060766.3-201ENST00000591442 263 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 AC018618.2-201ENST00000604770 446 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 MIR6734-201ENST00000621166 68 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 MIR4496-201ENST00000635896 61 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 DCAF13P1-201ENST00000495256 1330 ntBASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
SHANK3Q9BYB0 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 AC092155.2-201ENST00000454675 477 ntBASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 SNORA31.15-201ENST00000516771 132 ntBASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 RNA5SP402-201ENST00000517148 110 ntBASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 RNU4-60P-201ENST00000517239 135 ntBASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 PTP4A1P6-201ENST00000531034 478 ntBASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 ZNF192P1-203ENST00000565888 810 ntBASIC2.48□□□□□ -2.01
SHANK3Q9BYB0 AC115085.1-201ENST00000588924 229 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 237.9 ms