Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RNA5SP200-201ENST00000516360 103 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC008676.3-201ENST00000521237 435 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC011611.5-201ENST00000552477 578 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC010200.2-201ENST00000605098 235 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC119674.1-220ENST00000641502 1048 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AP005901.5-201ENST00000545779 1796 ntBASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
SHANK3Q9BYB0 AC091152.2-201ENST00000591628 2569 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 RNU6-457P-201ENST00000363999 107 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 RNU6-670P-201ENST00000364312 104 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 TRAPPC2P10-201ENST00000415662 323 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC026412.2-201ENST00000512270 1075 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 RNU6-491P-201ENST00000516099 110 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC105137.2-201ENST00000569073 466 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 PSMA6P4-201ENST00000603247 718 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC091488.1-201ENST00000604239 660 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 HMGB1P51-201ENST00000605166 638 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC009318.3-201ENST00000616916 503 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC000123.2-201ENST00000623124 461 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 DYNLT3P1-201ENST00000378574 347 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 SNORD21-201ENST00000383953 95 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 ZNF736P10Y-201ENST00000403990 1110 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC098826.1-201ENST00000433943 471 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 MOB1AP2-201ENST00000446060 614 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 TPMTP1-201ENST00000592307 737 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 AC090953.1-201ENST00000604305 1092 ntBASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.85□□□□□ -1.95
SHANK3Q9BYB0 MTCO1P14-201ENST00000441695 1559 ntBASIC2.84□□□□□ -1.95
SHANK3Q9BYB0 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 SNORA51.4-201ENST00000364993 124 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 CASP3P1-201ENST00000446037 609 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 RAD1P2-201ENST00000446414 663 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 HMGB1P41-201ENST00000520234 440 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 AC068714.1-201ENST00000559623 800 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 AC002076.2-201ENST00000617362 122 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 AL391597.1-201ENST00000618707 694 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 XIST_intron.1-201ENST00000619444 68 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 MIR219B-201ENST00000637023 88 ntBASIC2.84□□□□□ -1.96
SHANK3Q9BYB0 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 AC240504.1-201ENST00000395709 845 ntBASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 HMGB1P10-201ENST00000395823 563 ntBASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 RPL36AP6-201ENST00000435770 321 ntBASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 ATG10-AS1-201ENST00000504846 648 ntBASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 MIR4506-201ENST00000584693 77 ntBASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 AL360085.1-201ENST00000604713 532 ntBASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
SHANK3Q9BYB0 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 BTF3P4-201ENST00000418852 495 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 MTCO1P57-201ENST00000432182 261 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 UBE2V2P3-201ENST00000433562 437 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 SNORD13-201ENST00000459299 104 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 RNA5SP385-201ENST00000515947 110 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 AC007536.1-201ENST00000533382 349 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 MIR4512-201ENST00000583257 77 ntBASIC2.82□□□□□ -1.96
SHANK3Q9BYB0 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 156.8 ms