Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC011753.1-201ENST00000451001 220 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 Y_RNA.670-201ENST00000516255 105 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 OR8L1P-201ENST00000534005 955 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 OR4U1P-201ENST00000554958 912 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 SNORD39.2-201ENST00000579995 76 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 MIR3605-201ENST00000583214 100 ntBASIC3.3□□□□□ -1.88
SHANK3Q9BYB0 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 PNPT1P2-201ENST00000456768 2050 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC066616.2-201ENST00000559334 1481 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 Y_RNA.116-201ENST00000363292 103 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 RNU6-253P-201ENST00000384730 105 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 TRIM60P18-201ENST00000441518 828 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 RPL23AP14-201ENST00000468281 468 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC068587.2-201ENST00000478386 781 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC034244.2-201ENST00000514668 858 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 VTA1P2-201ENST00000520205 911 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC007938.3-201ENST00000604965 623 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 AC104454.1-201ENST00000421341 1401 ntBASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SHANK3Q9BYB0 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 AC123912.3-201ENST00000600907 1367 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 EI24P2-201ENST00000397776 1076 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 VN1R31P-201ENST00000417498 730 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 RWDD4P2-201ENST00000426392 563 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 RWDD4P1-201ENST00000488019 565 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 SNORA70.14-201ENST00000516205 110 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 NPM1P52-201ENST00000518264 846 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.28□□□□□ -1.88
SHANK3Q9BYB0 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 RNU6-321P-201ENST00000410912 106 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 PTP4A1P5-201ENST00000420305 455 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 NDUFA5P4-201ENST00000436704 385 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 HIGD1AP2-201ENST00000446367 280 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AL590399.6-201ENST00000446396 307 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 OR4G11P-201ENST00000492842 939 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 MTND4P2-201ENST00000507767 1203 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 RN7SKP24-201ENST00000515888 284 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 VN1R81P-201ENST00000602085 372 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AC068313.1-201ENST00000604028 1008 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AP005212.4-201ENST00000614206 710 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 FRG1DP-201ENST00000635586 771 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 NEAT1-202ENST00000501122 22743 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 RPS20P5-201ENST00000434808 360 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 MRPL50P4-201ENST00000446432 475 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 RPL36AP51-201ENST00000487216 318 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 SNORA31.1-201ENST00000515993 133 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 SNORA31.5-201ENST00000516190 133 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 RNU4-18P-201ENST00000516751 149 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AL359715.4-201ENST00000606629 1436 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 AP002967.1-201ENST00000624203 539 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 MIR7153-201ENST00000637758 57 ntBASIC3.27□□□□□ -1.89
SHANK3Q9BYB0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
SHANK3Q9BYB0 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.26□□□□□ -1.89
SHANK3Q9BYB0 Y_RNA.62-201ENST00000362840 99 ntBASIC3.26□□□□□ -1.89
SHANK3Q9BYB0 RPL31P45-201ENST00000419532 356 ntBASIC3.26□□□□□ -1.89
SHANK3Q9BYB0 RPS12P2-201ENST00000439728 269 ntBASIC3.26□□□□□ -1.89
SHANK3Q9BYB0 MTCO3P17-201ENST00000443775 513 ntBASIC3.26□□□□□ -1.89
SHANK3Q9BYB0 AC096638.1-201ENST00000444678 216 ntBASIC3.26□□□□□ -1.89
SHANK3Q9BYB0 AC098583.1-201ENST00000480875 255 ntBASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 181.1 ms