Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Prpf40aQ9R1C7 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Prpf40aQ9R1C7 Gm30023-201ENSMUST00000197970 889 ntBASIC25.78■■□□□ 1.72
Prpf40aQ9R1C7 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Prpf40aQ9R1C7 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Prpf40aQ9R1C7 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Prpf40aQ9R1C7 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
Prpf40aQ9R1C7 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Prpf40aQ9R1C7 Gm8503-201ENSMUST00000118131 455 ntBASIC25.77■■□□□ 1.72
Prpf40aQ9R1C7 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Prpf40aQ9R1C7 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC25.77■■□□□ 1.72
Prpf40aQ9R1C7 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Prpf40aQ9R1C7 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC25.76■■□□□ 1.71
Prpf40aQ9R1C7 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Prpf40aQ9R1C7 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Prpf40aQ9R1C7 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Prpf40aQ9R1C7 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC25.75■■□□□ 1.71
Prpf40aQ9R1C7 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Prpf40aQ9R1C7 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Prpf40aQ9R1C7 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC25.75■■□□□ 1.71
Prpf40aQ9R1C7 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Prpf40aQ9R1C7 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Prpf40aQ9R1C7 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Prpf40aQ9R1C7 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC25.73■■□□□ 1.71
Prpf40aQ9R1C7 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Prpf40aQ9R1C7 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Prpf40aQ9R1C7 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Prpf40aQ9R1C7 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Prpf40aQ9R1C7 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC25.71■■□□□ 1.71
Prpf40aQ9R1C7 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.71
Prpf40aQ9R1C7 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Prpf40aQ9R1C7 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Prpf40aQ9R1C7 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.71
Prpf40aQ9R1C7 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
Prpf40aQ9R1C7 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
Prpf40aQ9R1C7 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC25.7■■□□□ 1.7
Prpf40aQ9R1C7 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC25.68■■□□□ 1.7
Prpf40aQ9R1C7 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC25.68■■□□□ 1.7
Prpf40aQ9R1C7 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Prpf40aQ9R1C7 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC25.67■■□□□ 1.7
Prpf40aQ9R1C7 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Prpf40aQ9R1C7 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Prpf40aQ9R1C7 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
Prpf40aQ9R1C7 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
Prpf40aQ9R1C7 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Prpf40aQ9R1C7 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Prpf40aQ9R1C7 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC25.65■■□□□ 1.7
Prpf40aQ9R1C7 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC25.64■■□□□ 1.7
Prpf40aQ9R1C7 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC25.64■■□□□ 1.7
Prpf40aQ9R1C7 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC25.64■■□□□ 1.7
Prpf40aQ9R1C7 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC25.64■■□□□ 1.7
Prpf40aQ9R1C7 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
Prpf40aQ9R1C7 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
Prpf40aQ9R1C7 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Prpf40aQ9R1C7 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
Prpf40aQ9R1C7 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Prpf40aQ9R1C7 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Prpf40aQ9R1C7 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Prpf40aQ9R1C7 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Prpf40aQ9R1C7 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Prpf40aQ9R1C7 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Prpf40aQ9R1C7 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Prpf40aQ9R1C7 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC25.6■■□□□ 1.69
Prpf40aQ9R1C7 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Prpf40aQ9R1C7 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
Prpf40aQ9R1C7 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
Prpf40aQ9R1C7 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Prpf40aQ9R1C7 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC25.59■■□□□ 1.69
Prpf40aQ9R1C7 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Prpf40aQ9R1C7 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC25.59■■□□□ 1.69
Prpf40aQ9R1C7 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
Prpf40aQ9R1C7 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
Prpf40aQ9R1C7 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Prpf40aQ9R1C7 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
Prpf40aQ9R1C7 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Prpf40aQ9R1C7 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC25.56■■□□□ 1.68
Prpf40aQ9R1C7 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
Prpf40aQ9R1C7 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC25.56■■□□□ 1.68
Prpf40aQ9R1C7 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
Prpf40aQ9R1C7 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Prpf40aQ9R1C7 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC25.54■■□□□ 1.68
Prpf40aQ9R1C7 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC25.53■■□□□ 1.68
Prpf40aQ9R1C7 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Prpf40aQ9R1C7 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC25.53■■□□□ 1.68
Prpf40aQ9R1C7 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Prpf40aQ9R1C7 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Prpf40aQ9R1C7 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC25.52■■□□□ 1.68
Prpf40aQ9R1C7 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Prpf40aQ9R1C7 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
Prpf40aQ9R1C7 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Prpf40aQ9R1C7 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Prpf40aQ9R1C7 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
Prpf40aQ9R1C7 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
Retrieved 100 of 76,532 protein–RNA pairs in 109.6 ms