Protein–RNA interactions for Protein: Q9DC33

Hmg20a, High mobility group protein 20A, mousemouse

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmg20aQ9DC33 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Hmg20aQ9DC33 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Hmg20aQ9DC33 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Hmg20aQ9DC33 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
Hmg20aQ9DC33 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Hmg20aQ9DC33 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Hmg20aQ9DC33 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
Hmg20aQ9DC33 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.38■■□□□ 1.01
Hmg20aQ9DC33 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Hmg20aQ9DC33 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.38■■□□□ 1.01
Hmg20aQ9DC33 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Hmg20aQ9DC33 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.38■■□□□ 1.01
Hmg20aQ9DC33 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.38■■□□□ 1.01
Hmg20aQ9DC33 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Hmg20aQ9DC33 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Hmg20aQ9DC33 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Hmg20aQ9DC33 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC21.37■■□□□ 1.01
Hmg20aQ9DC33 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Hmg20aQ9DC33 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Hmg20aQ9DC33 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Hmg20aQ9DC33 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Hmg20aQ9DC33 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Hmg20aQ9DC33 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Hmg20aQ9DC33 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Hmg20aQ9DC33 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Hmg20aQ9DC33 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Hmg20aQ9DC33 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Hmg20aQ9DC33 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmg20aQ9DC33 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmg20aQ9DC33 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hmg20aQ9DC33 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.33■■□□□ 1
Hmg20aQ9DC33 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Hmg20aQ9DC33 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC21.32■■□□□ 1
Hmg20aQ9DC33 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Hmg20aQ9DC33 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Hmg20aQ9DC33 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Hmg20aQ9DC33 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Hmg20aQ9DC33 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Hmg20aQ9DC33 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Hmg20aQ9DC33 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Hmg20aQ9DC33 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.3■■□□□ 1
Hmg20aQ9DC33 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC21.3■■□□□ 1
Hmg20aQ9DC33 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Hmg20aQ9DC33 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Hmg20aQ9DC33 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Hmg20aQ9DC33 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Hmg20aQ9DC33 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.28■■□□□ 1
Hmg20aQ9DC33 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC21.28■■□□□ 1
Hmg20aQ9DC33 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC21.28■■□□□ 1
Hmg20aQ9DC33 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Hmg20aQ9DC33 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Hmg20aQ9DC33 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC21.27■■□□□ 1
Hmg20aQ9DC33 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Hmg20aQ9DC33 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hmg20aQ9DC33 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Hmg20aQ9DC33 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hmg20aQ9DC33 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hmg20aQ9DC33 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmg20aQ9DC33 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmg20aQ9DC33 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmg20aQ9DC33 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmg20aQ9DC33 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Hmg20aQ9DC33 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hmg20aQ9DC33 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmg20aQ9DC33 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmg20aQ9DC33 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Hmg20aQ9DC33 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hmg20aQ9DC33 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Hmg20aQ9DC33 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Hmg20aQ9DC33 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hmg20aQ9DC33 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmg20aQ9DC33 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Hmg20aQ9DC33 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.21■□□□□ 0.99
Hmg20aQ9DC33 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmg20aQ9DC33 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Hmg20aQ9DC33 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmg20aQ9DC33 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Hmg20aQ9DC33 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmg20aQ9DC33 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Hmg20aQ9DC33 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmg20aQ9DC33 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Hmg20aQ9DC33 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmg20aQ9DC33 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmg20aQ9DC33 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmg20aQ9DC33 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Hmg20aQ9DC33 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmg20aQ9DC33 Gm8109-201ENSMUST00000194076 746 ntBASIC21.18■□□□□ 0.98
Hmg20aQ9DC33 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
Hmg20aQ9DC33 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmg20aQ9DC33 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hmg20aQ9DC33 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Hmg20aQ9DC33 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmg20aQ9DC33 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmg20aQ9DC33 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Hmg20aQ9DC33 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Hmg20aQ9DC33 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Hmg20aQ9DC33 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Hmg20aQ9DC33 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmg20aQ9DC33 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
Hmg20aQ9DC33 Gm26115-201ENSMUST00000175605 87 ntBASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms