Protein–RNA interactions for Protein: Q8CC84

Lysmd4, LysM and putative peptidoglycan-binding domain-containing protein 4, mousemouse

Predictions only

Length 293 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lysmd4Q8CC84 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Lysmd4Q8CC84 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lysmd4Q8CC84 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Lysmd4Q8CC84 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lysmd4Q8CC84 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Lysmd4Q8CC84 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lysmd4Q8CC84 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lysmd4Q8CC84 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.16■□□□□ 0.98
Lysmd4Q8CC84 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Lysmd4Q8CC84 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lysmd4Q8CC84 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.16■□□□□ 0.98
Lysmd4Q8CC84 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Lysmd4Q8CC84 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
Lysmd4Q8CC84 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.14■□□□□ 0.97
Lysmd4Q8CC84 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.14■□□□□ 0.97
Lysmd4Q8CC84 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lysmd4Q8CC84 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Lysmd4Q8CC84 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Lysmd4Q8CC84 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Lysmd4Q8CC84 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lysmd4Q8CC84 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lysmd4Q8CC84 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Lysmd4Q8CC84 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lysmd4Q8CC84 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lysmd4Q8CC84 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Lysmd4Q8CC84 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Lysmd4Q8CC84 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Lysmd4Q8CC84 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Lysmd4Q8CC84 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Lysmd4Q8CC84 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Lysmd4Q8CC84 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Lysmd4Q8CC84 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Lysmd4Q8CC84 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Lysmd4Q8CC84 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Lysmd4Q8CC84 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Lysmd4Q8CC84 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Lysmd4Q8CC84 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Lysmd4Q8CC84 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Lysmd4Q8CC84 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Lysmd4Q8CC84 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Lysmd4Q8CC84 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
Lysmd4Q8CC84 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Lysmd4Q8CC84 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Lysmd4Q8CC84 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Lysmd4Q8CC84 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Lysmd4Q8CC84 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lysmd4Q8CC84 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lysmd4Q8CC84 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lysmd4Q8CC84 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Lysmd4Q8CC84 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Lysmd4Q8CC84 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Lysmd4Q8CC84 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.02■□□□□ 0.96
Lysmd4Q8CC84 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Lysmd4Q8CC84 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lysmd4Q8CC84 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Lysmd4Q8CC84 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lysmd4Q8CC84 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Lysmd4Q8CC84 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Lysmd4Q8CC84 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Lysmd4Q8CC84 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Lysmd4Q8CC84 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Lysmd4Q8CC84 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Lysmd4Q8CC84 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Lysmd4Q8CC84 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lysmd4Q8CC84 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.97■□□□□ 0.95
Lysmd4Q8CC84 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Lysmd4Q8CC84 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Lysmd4Q8CC84 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Lysmd4Q8CC84 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.97■□□□□ 0.95
Lysmd4Q8CC84 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lysmd4Q8CC84 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lysmd4Q8CC84 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Lysmd4Q8CC84 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC20.96■□□□□ 0.95
Lysmd4Q8CC84 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lysmd4Q8CC84 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.95■□□□□ 0.94
Lysmd4Q8CC84 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Lysmd4Q8CC84 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Lysmd4Q8CC84 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Lysmd4Q8CC84 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Lysmd4Q8CC84 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Lysmd4Q8CC84 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Lysmd4Q8CC84 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lysmd4Q8CC84 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Lysmd4Q8CC84 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Lysmd4Q8CC84 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lysmd4Q8CC84 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lysmd4Q8CC84 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lysmd4Q8CC84 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lysmd4Q8CC84 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Lysmd4Q8CC84 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lysmd4Q8CC84 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Lysmd4Q8CC84 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Lysmd4Q8CC84 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms