Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.44■■□□□ 1.82
Trim47Q8C0E3 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
Trim47Q8C0E3 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
Trim47Q8C0E3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.42■■□□□ 1.82
Trim47Q8C0E3 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim47Q8C0E3 Gm11599-201ENSMUST00000118720 878 ntBASIC26.39■■□□□ 1.82
Trim47Q8C0E3 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC26.38■■□□□ 1.81
Trim47Q8C0E3 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Trim47Q8C0E3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
Trim47Q8C0E3 Particl-201ENSMUST00000205370 1560 ntBASIC26.36■■□□□ 1.81
Trim47Q8C0E3 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim47Q8C0E3 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Trim47Q8C0E3 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim47Q8C0E3 AC131739.1-201ENSMUST00000221692 1245 ntBASIC26.33■■□□□ 1.81
Trim47Q8C0E3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Trim47Q8C0E3 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim47Q8C0E3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC26.31■■□□□ 1.8
Trim47Q8C0E3 Fezf2-202ENSMUST00000224023 1917 ntBASIC26.31■■□□□ 1.8
Trim47Q8C0E3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim47Q8C0E3 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim47Q8C0E3 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim47Q8C0E3 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC26.28■■□□□ 1.8
Trim47Q8C0E3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim47Q8C0E3 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Trim47Q8C0E3 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim47Q8C0E3 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trim47Q8C0E3 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim47Q8C0E3 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim47Q8C0E3 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim47Q8C0E3 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim47Q8C0E3 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim47Q8C0E3 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim47Q8C0E3 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim47Q8C0E3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim47Q8C0E3 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
Trim47Q8C0E3 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Trim47Q8C0E3 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC26.22■■□□□ 1.79
Trim47Q8C0E3 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim47Q8C0E3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Trim47Q8C0E3 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim47Q8C0E3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim47Q8C0E3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trim47Q8C0E3 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Gm37136-201ENSMUST00000194368 194 ntBASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
Trim47Q8C0E3 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
Trim47Q8C0E3 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC26.13■■□□□ 1.77
Trim47Q8C0E3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Trim47Q8C0E3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Trim47Q8C0E3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim47Q8C0E3 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
Trim47Q8C0E3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trim47Q8C0E3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC26.07■■□□□ 1.76
Trim47Q8C0E3 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Trim47Q8C0E3 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Trim47Q8C0E3 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC26.05■■□□□ 1.76
Trim47Q8C0E3 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
Trim47Q8C0E3 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.04■■□□□ 1.76
Trim47Q8C0E3 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim47Q8C0E3 AC167019.3-201ENSMUST00000228225 1266 ntBASIC26.03■■□□□ 1.76
Trim47Q8C0E3 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim47Q8C0E3 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim47Q8C0E3 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
Trim47Q8C0E3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.01■■□□□ 1.75
Trim47Q8C0E3 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Trim47Q8C0E3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
Trim47Q8C0E3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim47Q8C0E3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim47Q8C0E3 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim47Q8C0E3 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC25.98■■□□□ 1.75
Trim47Q8C0E3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Trim47Q8C0E3 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trim47Q8C0E3 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
Trim47Q8C0E3 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trim47Q8C0E3 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC25.96■■□□□ 1.75
Trim47Q8C0E3 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Trim47Q8C0E3 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 85.5 ms