Protein–RNA interactions for Protein: Q6PDM4

Ccdc36, Interactor of HORMAD1 protein 1, mousemouse

Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc36Q6PDM4 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc36Q6PDM4 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
Ccdc36Q6PDM4 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ccdc36Q6PDM4 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc36Q6PDM4 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc36Q6PDM4 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Ccdc36Q6PDM4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc36Q6PDM4 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ccdc36Q6PDM4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.79■□□□□ 0.76
Ccdc36Q6PDM4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Ccdc36Q6PDM4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.78■□□□□ 0.76
Ccdc36Q6PDM4 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ccdc36Q6PDM4 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
Ccdc36Q6PDM4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc36Q6PDM4 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
Ccdc36Q6PDM4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ccdc36Q6PDM4 Zfp131-205ENSMUST00000223812 663 ntBASIC19.77■□□□□ 0.76
Ccdc36Q6PDM4 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Ccdc36Q6PDM4 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc36Q6PDM4 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ccdc36Q6PDM4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc36Q6PDM4 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc36Q6PDM4 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Ccdc36Q6PDM4 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ccdc36Q6PDM4 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Ccdc36Q6PDM4 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Ccdc36Q6PDM4 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc36Q6PDM4 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc36Q6PDM4 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.74■□□□□ 0.75
Ccdc36Q6PDM4 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ccdc36Q6PDM4 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ccdc36Q6PDM4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.72■□□□□ 0.75
Ccdc36Q6PDM4 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc36Q6PDM4 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc36Q6PDM4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Ccdc36Q6PDM4 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Ccdc36Q6PDM4 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Ccdc36Q6PDM4 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc36Q6PDM4 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Ccdc36Q6PDM4 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc36Q6PDM4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ccdc36Q6PDM4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Ccdc36Q6PDM4 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc36Q6PDM4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc36Q6PDM4 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ccdc36Q6PDM4 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ccdc36Q6PDM4 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc36Q6PDM4 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc36Q6PDM4 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc36Q6PDM4 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ccdc36Q6PDM4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Ccdc36Q6PDM4 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc36Q6PDM4 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc36Q6PDM4 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc36Q6PDM4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc36Q6PDM4 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ccdc36Q6PDM4 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Ccdc36Q6PDM4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.63■□□□□ 0.73
Ccdc36Q6PDM4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc36Q6PDM4 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Ccdc36Q6PDM4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC19.63■□□□□ 0.73
Ccdc36Q6PDM4 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc36Q6PDM4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Ccdc36Q6PDM4 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 Tdp2-203ENSMUST00000223804 1136 ntBASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
Ccdc36Q6PDM4 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Ccdc36Q6PDM4 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc36Q6PDM4 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc36Q6PDM4 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Ccdc36Q6PDM4 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Ccdc36Q6PDM4 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms