Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC26.3■■□□□ 1.8
Msh3P13705 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Msh3P13705 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Msh3P13705 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
Msh3P13705 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Msh3P13705 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
Msh3P13705 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC26.27■■□□□ 1.8
Msh3P13705 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Msh3P13705 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Msh3P13705 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
Msh3P13705 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.26■■□□□ 1.79
Msh3P13705 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.26■■□□□ 1.79
Msh3P13705 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.25■■□□□ 1.79
Msh3P13705 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Msh3P13705 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Msh3P13705 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.24■■□□□ 1.79
Msh3P13705 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Msh3P13705 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Msh3P13705 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Msh3P13705 Gm9939-201ENSMUST00000067161 1154 ntBASIC26.2■■□□□ 1.78
Msh3P13705 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Msh3P13705 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Msh3P13705 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Msh3P13705 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Msh3P13705 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
Msh3P13705 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.16■■□□□ 1.78
Msh3P13705 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Msh3P13705 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
Msh3P13705 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC26.15■■□□□ 1.78
Msh3P13705 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.15■■□□□ 1.78
Msh3P13705 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.15■■□□□ 1.78
Msh3P13705 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC26.15■■□□□ 1.78
Msh3P13705 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Msh3P13705 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Msh3P13705 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Msh3P13705 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.14■■□□□ 1.78
Msh3P13705 AC122428.3-201ENSMUST00000215551 2290 ntBASIC26.13■■□□□ 1.77
Msh3P13705 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
Msh3P13705 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC26.13■■□□□ 1.77
Msh3P13705 Particl-201ENSMUST00000205370 1560 ntBASIC26.13■■□□□ 1.77
Msh3P13705 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.12■■□□□ 1.77
Msh3P13705 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Msh3P13705 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Msh3P13705 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Msh3P13705 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Msh3P13705 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
Msh3P13705 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Msh3P13705 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Msh3P13705 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
Msh3P13705 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Msh3P13705 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Msh3P13705 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC26.09■■□□□ 1.77
Msh3P13705 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Msh3P13705 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.08■■□□□ 1.77
Msh3P13705 Gm8503-201ENSMUST00000118131 455 ntBASIC26.08■■□□□ 1.77
Msh3P13705 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Msh3P13705 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC26.08■■□□□ 1.77
Msh3P13705 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.76
Msh3P13705 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
Msh3P13705 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Msh3P13705 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Msh3P13705 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Msh3P13705 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
Msh3P13705 Gm6821-201ENSMUST00000107540 542 ntBASIC26.06■■□□□ 1.76
Msh3P13705 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC26.06■■□□□ 1.76
Msh3P13705 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.06■■□□□ 1.76
Msh3P13705 AC153890.1-201ENSMUST00000220021 2469 ntBASIC26.06■■□□□ 1.76
Msh3P13705 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
Msh3P13705 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.05■■□□□ 1.76
Msh3P13705 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Msh3P13705 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Msh3P13705 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Msh3P13705 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Msh3P13705 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC26.03■■□□□ 1.76
Msh3P13705 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC26.03■■□□□ 1.76
Msh3P13705 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.02■■□□□ 1.76
Msh3P13705 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Msh3P13705 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Msh3P13705 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Msh3P13705 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC26■■□□□ 1.75
Msh3P13705 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Msh3P13705 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Msh3P13705 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC25.98■■□□□ 1.75
Msh3P13705 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC25.98■■□□□ 1.75
Msh3P13705 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Msh3P13705 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Msh3P13705 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Msh3P13705 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.75
Msh3P13705 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
Msh3P13705 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Msh3P13705 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Msh3P13705 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Msh3P13705 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Msh3P13705 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Msh3P13705 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Msh3P13705 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Msh3P13705 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Msh3P13705 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Msh3P13705 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Msh3P13705 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms