Protein–RNA interactions for Protein: P10855

Ccl3, C-C motif chemokine 3, mousemouse

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccl3P10855 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccl3P10855 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.32■■□□□ 1
Ccl3P10855 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccl3P10855 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccl3P10855 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccl3P10855 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccl3P10855 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ccl3P10855 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.3■■□□□ 1
Ccl3P10855 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.3■■□□□ 1
Ccl3P10855 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccl3P10855 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ccl3P10855 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.29■■□□□ 1
Ccl3P10855 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Ccl3P10855 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.28■■□□□ 1
Ccl3P10855 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Ccl3P10855 Mir3960-201ENSMUST00000198213 73 ntBASIC21.27■■□□□ 1
Ccl3P10855 Gm16437-201ENSMUST00000025669 507 ntBASIC21.27■■□□□ 1
Ccl3P10855 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.26■□□□□ 0.99
Ccl3P10855 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC21.26■□□□□ 0.99
Ccl3P10855 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccl3P10855 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccl3P10855 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccl3P10855 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.25■□□□□ 0.99
Ccl3P10855 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.24■□□□□ 0.99
Ccl3P10855 Gm12366-201ENSMUST00000121722 873 ntBASIC21.24■□□□□ 0.99
Ccl3P10855 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.24■□□□□ 0.99
Ccl3P10855 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.24■□□□□ 0.99
Ccl3P10855 Gm5786-201ENSMUST00000085368 882 ntBASIC21.24■□□□□ 0.99
Ccl3P10855 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccl3P10855 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccl3P10855 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC21.23■□□□□ 0.99
Ccl3P10855 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ccl3P10855 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Ccl3P10855 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ccl3P10855 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.22■□□□□ 0.99
Ccl3P10855 Gm45364-201ENSMUST00000210883 159 ntBASIC21.22■□□□□ 0.99
Ccl3P10855 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccl3P10855 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccl3P10855 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Ccl3P10855 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.21■□□□□ 0.99
Ccl3P10855 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.21■□□□□ 0.99
Ccl3P10855 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Ccl3P10855 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccl3P10855 Gm37136-201ENSMUST00000194368 194 ntBASIC21.21■□□□□ 0.99
Ccl3P10855 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Ccl3P10855 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.19■□□□□ 0.98
Ccl3P10855 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccl3P10855 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.19■□□□□ 0.98
Ccl3P10855 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccl3P10855 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccl3P10855 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccl3P10855 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.16■□□□□ 0.98
Ccl3P10855 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ccl3P10855 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccl3P10855 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.16■□□□□ 0.98
Ccl3P10855 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Ccl3P10855 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccl3P10855 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccl3P10855 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccl3P10855 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ccl3P10855 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ccl3P10855 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ccl3P10855 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ccl3P10855 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccl3P10855 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ccl3P10855 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ccl3P10855 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.13■□□□□ 0.97
Ccl3P10855 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.12■□□□□ 0.97
Ccl3P10855 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Ccl3P10855 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccl3P10855 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ccl3P10855 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ccl3P10855 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccl3P10855 Gm27502-201ENSMUST00000183495 199 ntBASIC21.1■□□□□ 0.97
Ccl3P10855 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.1■□□□□ 0.97
Ccl3P10855 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ccl3P10855 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ccl3P10855 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccl3P10855 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccl3P10855 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ccl3P10855 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Ccl3P10855 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.07■□□□□ 0.96
Ccl3P10855 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
Ccl3P10855 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.07■□□□□ 0.96
Ccl3P10855 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccl3P10855 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ccl3P10855 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.06■□□□□ 0.96
Ccl3P10855 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ccl3P10855 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Ccl3P10855 Gm7332-201ENSMUST00000118351 454 ntBASIC21.05■□□□□ 0.96
Ccl3P10855 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.05■□□□□ 0.96
Ccl3P10855 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccl3P10855 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccl3P10855 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccl3P10855 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccl3P10855 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ccl3P10855 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccl3P10855 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ccl3P10855 Zxda-201ENSMUST00000117281 2621 ntBASIC21.04■□□□□ 0.96
Ccl3P10855 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 78.9 ms