Protein–RNA interactions for Protein: A0A0B4J1K4

Trav19, T cell receptor alpha variable 19 (Fragment), mousemouse

Predictions only

Length 119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav19A0A0B4J1K4 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Trav19A0A0B4J1K4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav19A0A0B4J1K4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trav19A0A0B4J1K4 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Trav19A0A0B4J1K4 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Trav19A0A0B4J1K4 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav19A0A0B4J1K4 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav19A0A0B4J1K4 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Trav19A0A0B4J1K4 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav19A0A0B4J1K4 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.51■□□□□ 0.39
Trav19A0A0B4J1K4 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav19A0A0B4J1K4 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav19A0A0B4J1K4 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav19A0A0B4J1K4 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav19A0A0B4J1K4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trav19A0A0B4J1K4 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trav19A0A0B4J1K4 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav19A0A0B4J1K4 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC17.49■□□□□ 0.39
Trav19A0A0B4J1K4 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav19A0A0B4J1K4 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav19A0A0B4J1K4 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav19A0A0B4J1K4 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav19A0A0B4J1K4 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav19A0A0B4J1K4 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav19A0A0B4J1K4 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav19A0A0B4J1K4 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Trav19A0A0B4J1K4 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav19A0A0B4J1K4 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Trav19A0A0B4J1K4 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav19A0A0B4J1K4 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav19A0A0B4J1K4 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav19A0A0B4J1K4 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trav19A0A0B4J1K4 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav19A0A0B4J1K4 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC17.46■□□□□ 0.39
Trav19A0A0B4J1K4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC17.46■□□□□ 0.39
Trav19A0A0B4J1K4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav19A0A0B4J1K4 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav19A0A0B4J1K4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
Trav19A0A0B4J1K4 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
Trav19A0A0B4J1K4 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav19A0A0B4J1K4 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trav19A0A0B4J1K4 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Trav19A0A0B4J1K4 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav19A0A0B4J1K4 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav19A0A0B4J1K4 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav19A0A0B4J1K4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav19A0A0B4J1K4 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trav19A0A0B4J1K4 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trav19A0A0B4J1K4 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav19A0A0B4J1K4 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav19A0A0B4J1K4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav19A0A0B4J1K4 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav19A0A0B4J1K4 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav19A0A0B4J1K4 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav19A0A0B4J1K4 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav19A0A0B4J1K4 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trav19A0A0B4J1K4 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
Trav19A0A0B4J1K4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav19A0A0B4J1K4 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav19A0A0B4J1K4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav19A0A0B4J1K4 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Trav19A0A0B4J1K4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.38■□□□□ 0.37
Trav19A0A0B4J1K4 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav19A0A0B4J1K4 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav19A0A0B4J1K4 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav19A0A0B4J1K4 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav19A0A0B4J1K4 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav19A0A0B4J1K4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav19A0A0B4J1K4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Trav19A0A0B4J1K4 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav19A0A0B4J1K4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav19A0A0B4J1K4 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav19A0A0B4J1K4 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav19A0A0B4J1K4 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav19A0A0B4J1K4 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Trav19A0A0B4J1K4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav19A0A0B4J1K4 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Trav19A0A0B4J1K4 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Trav19A0A0B4J1K4 Il17rd-202ENSMUST00000223942 2186 ntBASIC17.34■□□□□ 0.37
Trav19A0A0B4J1K4 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav19A0A0B4J1K4 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Trav19A0A0B4J1K4 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Trav19A0A0B4J1K4 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav19A0A0B4J1K4 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav19A0A0B4J1K4 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms