Protein–RNA interactions for Protein: A0A0B4J1H2

Trbv13-3, T cell receptor beta, variable 13-3 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv13-3A0A0B4J1H2 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.39■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv13-3A0A0B4J1H2 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trbv13-3A0A0B4J1H2 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.34■□□□□ 0.53
Trbv13-3A0A0B4J1H2 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.53
Trbv13-3A0A0B4J1H2 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.33■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv13-3A0A0B4J1H2 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC18.32■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC18.31■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv13-3A0A0B4J1H2 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv13-3A0A0B4J1H2 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.3■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Peli2-204ENSMUST00000226513 1320 ntBASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Gm27322-201ENSMUST00000184007 104 ntBASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.28■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Trbv13-3A0A0B4J1H2 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.27■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trbv13-3A0A0B4J1H2 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.26■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trbv13-3A0A0B4J1H2 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Gm17082-201ENSMUST00000166043 1091 ntBASIC18.25■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.25■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.24■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trbv13-3A0A0B4J1H2 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trbv13-3A0A0B4J1H2 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 11.5 ms