Protein–RNA interactions for Protein: A0A075B638

Trav4-2, T cell receptor alpha variable 4-2 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-2A0A075B638 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Trav4-2A0A075B638 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
Trav4-2A0A075B638 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Trav4-2A0A075B638 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav4-2A0A075B638 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Trav4-2A0A075B638 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Trav4-2A0A075B638 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.66■□□□□ 0.58
Trav4-2A0A075B638 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.66■□□□□ 0.58
Trav4-2A0A075B638 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav4-2A0A075B638 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.65■□□□□ 0.58
Trav4-2A0A075B638 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trav4-2A0A075B638 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trav4-2A0A075B638 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trav4-2A0A075B638 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.63■□□□□ 0.57
Trav4-2A0A075B638 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav4-2A0A075B638 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trav4-2A0A075B638 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Trav4-2A0A075B638 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trav4-2A0A075B638 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trav4-2A0A075B638 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trav4-2A0A075B638 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trav4-2A0A075B638 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trav4-2A0A075B638 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trav4-2A0A075B638 Gm26115-201ENSMUST00000175605 87 ntBASIC18.58■□□□□ 0.56
Trav4-2A0A075B638 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trav4-2A0A075B638 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav4-2A0A075B638 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trav4-2A0A075B638 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trav4-2A0A075B638 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav4-2A0A075B638 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Trav4-2A0A075B638 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trav4-2A0A075B638 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav4-2A0A075B638 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav4-2A0A075B638 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
Trav4-2A0A075B638 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav4-2A0A075B638 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.54■□□□□ 0.56
Trav4-2A0A075B638 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav4-2A0A075B638 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav4-2A0A075B638 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav4-2A0A075B638 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4-2A0A075B638 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4-2A0A075B638 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4-2A0A075B638 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4-2A0A075B638 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4-2A0A075B638 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav4-2A0A075B638 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Trav4-2A0A075B638 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav4-2A0A075B638 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Trav4-2A0A075B638 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Trav4-2A0A075B638 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav4-2A0A075B638 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav4-2A0A075B638 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Trav4-2A0A075B638 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav4-2A0A075B638 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav4-2A0A075B638 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav4-2A0A075B638 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.5■□□□□ 0.55
Trav4-2A0A075B638 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav4-2A0A075B638 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC18.5■□□□□ 0.55
Trav4-2A0A075B638 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav4-2A0A075B638 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav4-2A0A075B638 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav4-2A0A075B638 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav4-2A0A075B638 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.49■□□□□ 0.55
Trav4-2A0A075B638 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav4-2A0A075B638 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav4-2A0A075B638 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Trav4-2A0A075B638 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav4-2A0A075B638 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav4-2A0A075B638 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Trav4-2A0A075B638 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav4-2A0A075B638 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Trav4-2A0A075B638 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav4-2A0A075B638 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav4-2A0A075B638 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav4-2A0A075B638 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav4-2A0A075B638 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav4-2A0A075B638 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Trav4-2A0A075B638 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Trav4-2A0A075B638 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Trav4-2A0A075B638 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav4-2A0A075B638 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms