Protein–RNA interactions for Protein: A0A075B633

Trav8n-2, T cell receptor alpha variable 8n-2 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav8n-2A0A075B633 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Trav8n-2A0A075B633 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Trav8n-2A0A075B633 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
Trav8n-2A0A075B633 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 Gm12366-201ENSMUST00000121722 873 ntBASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 Gm5786-201ENSMUST00000085368 882 ntBASIC21.92■■□□□ 1.1
Trav8n-2A0A075B633 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav8n-2A0A075B633 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.91■■□□□ 1.1
Trav8n-2A0A075B633 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Trav8n-2A0A075B633 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.91■■□□□ 1.1
Trav8n-2A0A075B633 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Trav8n-2A0A075B633 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Trav8n-2A0A075B633 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.9■■□□□ 1.1
Trav8n-2A0A075B633 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trav8n-2A0A075B633 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.89■■□□□ 1.09
Trav8n-2A0A075B633 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
Trav8n-2A0A075B633 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Trav8n-2A0A075B633 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Trav8n-2A0A075B633 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Trav8n-2A0A075B633 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.87■■□□□ 1.09
Trav8n-2A0A075B633 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav8n-2A0A075B633 Gm37136-201ENSMUST00000194368 194 ntBASIC21.87■■□□□ 1.09
Trav8n-2A0A075B633 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Trav8n-2A0A075B633 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav8n-2A0A075B633 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Trav8n-2A0A075B633 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trav8n-2A0A075B633 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trav8n-2A0A075B633 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trav8n-2A0A075B633 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.86■■□□□ 1.09
Trav8n-2A0A075B633 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Trav8n-2A0A075B633 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Trav8n-2A0A075B633 Gm45364-201ENSMUST00000210883 159 ntBASIC21.85■■□□□ 1.09
Trav8n-2A0A075B633 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav8n-2A0A075B633 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trav8n-2A0A075B633 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Trav8n-2A0A075B633 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trav8n-2A0A075B633 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trav8n-2A0A075B633 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav8n-2A0A075B633 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trav8n-2A0A075B633 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trav8n-2A0A075B633 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trav8n-2A0A075B633 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav8n-2A0A075B633 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trav8n-2A0A075B633 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav8n-2A0A075B633 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav8n-2A0A075B633 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trav8n-2A0A075B633 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trav8n-2A0A075B633 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.81■■□□□ 1.08
Trav8n-2A0A075B633 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.81■■□□□ 1.08
Trav8n-2A0A075B633 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.8■■□□□ 1.08
Trav8n-2A0A075B633 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav8n-2A0A075B633 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trav8n-2A0A075B633 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav8n-2A0A075B633 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav8n-2A0A075B633 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trav8n-2A0A075B633 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.79■■□□□ 1.08
Trav8n-2A0A075B633 Gm7332-201ENSMUST00000118351 454 ntBASIC21.78■■□□□ 1.08
Trav8n-2A0A075B633 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav8n-2A0A075B633 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trav8n-2A0A075B633 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
Trav8n-2A0A075B633 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trav8n-2A0A075B633 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Trav8n-2A0A075B633 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC21.76■■□□□ 1.07
Trav8n-2A0A075B633 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.76■■□□□ 1.07
Trav8n-2A0A075B633 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav8n-2A0A075B633 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trav8n-2A0A075B633 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.76■■□□□ 1.07
Trav8n-2A0A075B633 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trav8n-2A0A075B633 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav8n-2A0A075B633 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.75■■□□□ 1.07
Trav8n-2A0A075B633 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav8n-2A0A075B633 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trav8n-2A0A075B633 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.75■■□□□ 1.07
Trav8n-2A0A075B633 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.74■■□□□ 1.07
Trav8n-2A0A075B633 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Trav8n-2A0A075B633 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav8n-2A0A075B633 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
Trav8n-2A0A075B633 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.73■■□□□ 1.07
Trav8n-2A0A075B633 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav8n-2A0A075B633 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav8n-2A0A075B633 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Trav8n-2A0A075B633 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Trav8n-2A0A075B633 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.72■■□□□ 1.07
Trav8n-2A0A075B633 Gm27502-201ENSMUST00000183495 199 ntBASIC21.72■■□□□ 1.07
Trav8n-2A0A075B633 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Trav8n-2A0A075B633 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Trav8n-2A0A075B633 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav8n-2A0A075B633 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Trav8n-2A0A075B633 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav8n-2A0A075B633 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC21.7■■□□□ 1.06
Trav8n-2A0A075B633 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav8n-2A0A075B633 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav8n-2A0A075B633 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Trav8n-2A0A075B633 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trav8n-2A0A075B633 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 12.5 ms