Protein–RNA interactions for Protein: P53135

SLD3, DNA replication regulator SLD3, yeastyeast

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SLD3P53135 tT(AGU)I1tT(AGU)I1 73 nt0.6□□□□□ -2.31
SLD3P53135 tT(AGU)I2tT(AGU)I2 73 nt0.6□□□□□ -2.31
SLD3P53135 tT(AGU)JtT(AGU)J 73 nt0.6□□□□□ -2.31
SLD3P53135 tT(AGU)N1tT(AGU)N1 73 nt0.6□□□□□ -2.31
SLD3P53135 tT(AGU)N2tT(AGU)N2 73 nt0.6□□□□□ -2.31
SLD3P53135 tT(AGU)O1tT(AGU)O1 73 nt0.6□□□□□ -2.31
SLD3P53135 tT(AGU)O2tT(AGU)O2 73 nt0.6□□□□□ -2.31
SLD3P53135 YPL060C-AYPL060C-A 3315 nt0.6□□□□□ -2.31
SLD3P53135 CSE1YGL238W 2883 nt0.58□□□□□ -2.32
SLD3P53135 RCO1YMR075W 2055 nt0.57□□□□□ -2.32
SLD3P53135 YGR164WYGR164W 336 nt0.54□□□□□ -2.32
SLD3P53135 YBL100W-BYBL100W-B 5313 nt0.54□□□□□ -2.32
SLD3P53135 YKL145W-AYKL145W-A 93 nt0.53□□□□□ -2.32
SLD3P53135 YOL014WYOL014W 375 nt0.52□□□□□ -2.33
SLD3P53135 BIR1YJR089W 2865 nt0.49□□□□□ -2.33
SLD3P53135 YBR099CYBR099C 384 nt0.48□□□□□ -2.33
SLD3P53135 YNL205CYNL205C 423 nt0.46□□□□□ -2.34
SLD3P53135 MLP2YIL149C 5040 nt0.46□□□□□ -2.34
SLD3P53135 YOR186C-AYOR186C-A 210 nt0.45□□□□□ -2.34
SLD3P53135 SOM1YEL059C-A 225 nt0.43□□□□□ -2.34
SLD3P53135 FMP27YLR454W 7887 nt0.43□□□□□ -2.34
SLD3P53135 YCR095W-AYCR095W-A 159 nt0.42□□□□□ -2.34
SLD3P53135 AI1Q0050 2505 nt0.39□□□□□ -2.35
SLD3P53135 PMP2YEL017C-A 132 nt0.39□□□□□ -2.35
SLD3P53135 YIL071W-AYIL071W-A 477 nt0.39□□□□□ -2.35
SLD3P53135 YCL001W-BYCL001W-B 255 nt0.39□□□□□ -2.35
SLD3P53135 YJL077W-AYJL077W-A 87 nt0.38□□□□□ -2.35
SLD3P53135 ESP1YGR098C 4893 nt0.37□□□□□ -2.35
SLD3P53135 snR69snR69 101 nt0.37□□□□□ -2.35
SLD3P53135 ATP8Q0080 147 nt0.37□□□□□ -2.35
SLD3P53135 YNL170WYNL170W 396 nt0.37□□□□□ -2.35
SLD3P53135 EST1YLR233C 2100 nt0.34□□□□□ -2.35
SLD3P53135 YOL013W-AYOL013W-A 192 nt0.33□□□□□ -2.36
SLD3P53135 YNL054W-BYNL054W-B 5250 nt0.32□□□□□ -2.36
SLD3P53135 SEC10YLR166C 2616 nt0.32□□□□□ -2.36
SLD3P53135 YNL266WYNL266W 420 nt0.31□□□□□ -2.36
SLD3P53135 THO2YNL139C 4794 nt0.29□□□□□ -2.36
SLD3P53135 Q0092Q0092 141 nt0.29□□□□□ -2.36
SLD3P53135 SOV1YMR066W 2697 nt0.29□□□□□ -2.36
SLD3P53135 RDS3YPR094W 324 nt0.27□□□□□ -2.37
SLD3P53135 tD(GUC)QtD(GUC)Q 75 nt0.24□□□□□ -2.37
SLD3P53135 YBR178WYBR178W 375 nt0.22□□□□□ -2.37
SLD3P53135 YER078W-AYER078W-A 165 nt0.21□□□□□ -2.38
SLD3P53135 YBR196C-AYBR196C-A 150 nt0.21□□□□□ -2.38
SLD3P53135 tQ(UUG)QtQ(UUG)Q 76 nt0.2□□□□□ -2.38
SLD3P53135 YLR286W-AYLR286W-A 135 nt0.12□□□□□ -2.39
SLD3P53135 YDL159C-BYDL159C-B 177 nt0.1□□□□□ -2.39
SLD3P53135 YER090C-AYER090C-A 90 nt0.1□□□□□ -2.39
SLD3P53135 snR128snR128 126 nt0.07□□□□□ -2.4
SLD3P53135 snR50snR50 90 nt0.04□□□□□ -2.4
SLD3P53135 YLR299C-AYLR299C-A 93 nt0.03□□□□□ -2.4
SLD3P53135 snR45snR45 172 nt0.02□□□□□ -2.41
SLD3P53135 YML100W-AYML100W-A 174 nt0□□□□□ -2.41
SLD3P53135 YAL037C-AYAL037C-A 93 nt-0.09□□□□□ -2.42
SLD3P53135 YNL103W-AYNL103W-A 90 nt-0.1□□□□□ -2.43
SLD3P53135 snR61snR61 90 nt-0.11□□□□□ -2.43
SLD3P53135 snR67snR67 82 nt-0.12□□□□□ -2.43
SLD3P53135 YOL083C-AYOL083C-A 141 nt-0.12□□□□□ -2.43
SLD3P53135 snR81snR81 201 nt-0.14□□□□□ -2.43
SLD3P53135 Q0143Q0143 153 nt-0.14□□□□□ -2.43
SLD3P53135 YBL071C-BYBL071C-B 99 nt-0.15□□□□□ -2.43
SLD3P53135 TFB5YDR079C-A 219 nt-0.17□□□□□ -2.44
SLD3P53135 YML054C-AYML054C-A 159 nt-0.17□□□□□ -2.44
SLD3P53135 YGL041C-BYGL041C-B 183 nt-0.2□□□□□ -2.44
SLD3P53135 YHR180C-BYHR180C-B 105 nt-0.25□□□□□ -2.45
SLD3P53135 SBH2YER019C-A 267 nt-0.27□□□□□ -2.45
SLD3P53135 YOL164W-AYOL164W-A 183 nt-0.28□□□□□ -2.45
SLD3P53135 PAU9YBL108C-A 129 nt-0.31□□□□□ -2.46
SLD3P53135 snR85snR85 171 nt-0.32□□□□□ -2.46
SLD3P53135 tA(UGC)QtA(UGC)Q 76 nt-0.33□□□□□ -2.46
SLD3P53135 SKI7YOR076C 2244 nt-0.33□□□□□ -2.46
SLD3P53135 YBL100W-CYBL100W-C 120 nt-0.34□□□□□ -2.46
SLD3P53135 YJL113WYJL113W 4647 nt-0.38□□□□□ -2.47
SLD3P53135 YGR240C-AYGR240C-A 201 nt-0.39□□□□□ -2.47
SLD3P53135 YBR109W-AYBR109W-A 225 nt-0.42□□□□□ -2.48
SLD3P53135 snR47snR47 99 nt-0.43□□□□□ -2.48
SLD3P53135 URB1YKL014C 5295 nt-0.44□□□□□ -2.48
SLD3P53135 YBR296C-AYBR296C-A 120 nt-0.45□□□□□ -2.48
SLD3P53135 RPL41AYDL184C 78 nt-0.46□□□□□ -2.48
SLD3P53135 YMR326CYMR326C 309 nt-0.48□□□□□ -2.49
SLD3P53135 tS(GCU)Q1tS(GCU)Q1 86 nt-0.5□□□□□ -2.49
SLD3P53135 YHR217CYHR217C 462 nt-0.51□□□□□ -2.49
SLD3P53135 snR62snR62 100 nt-0.54□□□□□ -2.5
SLD3P53135 snR38snR38 95 nt-0.55□□□□□ -2.5
SLD3P53135 YBL109WYBL109W 336 nt-0.59□□□□□ -2.5
SLD3P53135 YDR034C-AYDR034C-A 177 nt-0.64□□□□□ -2.51
SLD3P53135 YHL009W-BYHL009W-B 5409 nt-0.65□□□□□ -2.51
SLD3P53135 snR33snR33 183 nt-0.65□□□□□ -2.51
SLD3P53135 tT(UGU)G1tT(UGU)G1 72 nt-0.67□□□□□ -2.52
SLD3P53135 tT(UGU)G2tT(UGU)G2 72 nt-0.67□□□□□ -2.52
SLD3P53135 tT(UGU)PtT(UGU)P 72 nt-0.67□□□□□ -2.52
SLD3P53135 YKL106C-AYKL106C-A 120 nt-0.72□□□□□ -2.52
SLD3P53135 YKL225WYKL225W 348 nt-0.72□□□□□ -2.52
SLD3P53135 snR161snR161 161 nt-0.72□□□□□ -2.52
SLD3P53135 YDR524C-AYDR524C-A 120 nt-0.75□□□□□ -2.53
SLD3P53135 YOR376W-AYOR376W-A 156 nt-0.75□□□□□ -2.53
SLD3P53135 tP(UGG)QtP(UGG)Q 72 nt-0.85□□□□□ -2.55
SLD3P53135 YOR316C-AYOR316C-A 210 nt-0.88□□□□□ -2.55
SLD3P53135 YLL066W-BYLL066W-B 171 nt-0.89□□□□□ -2.55
SLD3P53135 YDL247W-AYDL247W-A 75 nt-0.94□□□□□ -2.56
Retrieved 100 of 7,029 protein–RNA pairs in 28.1 ms