Protein–RNA interactions for Protein: P34110

VPS35, Vacuolar protein sorting-associated protein 35, yeastyeast

Predictions only

Length 944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS35P34110 snR69snR69 101 nt1.14□□□□□ -2.23
VPS35P34110 tD(GUC)QtD(GUC)Q 75 nt1.14□□□□□ -2.23
VPS35P34110 BUL2YML111W 2763 nt1.13□□□□□ -2.23
VPS35P34110 VAM6YDL077C 3150 nt1.13□□□□□ -2.23
VPS35P34110 DOP1YDR141C 5097 nt1.12□□□□□ -2.23
VPS35P34110 RPS26AYGL189C 360 nt1.12□□□□□ -2.23
VPS35P34110 YLR286W-AYLR286W-A 135 nt1.12□□□□□ -2.23
VPS35P34110 YOR192C-BYOR192C-B 5313 nt1.11□□□□□ -2.23
VPS35P34110 MYO1YHR023W 5787 nt1.09□□□□□ -2.24
VPS35P34110 YLL066W-BYLL066W-B 171 nt1.07□□□□□ -2.24
VPS35P34110 LTE1YAL024C 4308 nt1.06□□□□□ -2.24
VPS35P34110 snR62snR62 100 nt1.06□□□□□ -2.24
VPS35P34110 YJL077W-AYJL077W-A 87 nt1.05□□□□□ -2.24
VPS35P34110 RDS3YPR094W 324 nt1.05□□□□□ -2.24
VPS35P34110 snR45snR45 172 nt1.04□□□□□ -2.24
VPS35P34110 PET111YMR257C 2403 nt1.03□□□□□ -2.25
VPS35P34110 EMT1tM(CAU)D 73 nt1.02□□□□□ -2.25
VPS35P34110 EMT5tM(CAU)J1 73 nt1.02□□□□□ -2.25
VPS35P34110 EMT3tM(CAU)J2 73 nt1.02□□□□□ -2.25
VPS35P34110 EMT4tM(CAU)M 73 nt1.02□□□□□ -2.25
VPS35P34110 EMT2tM(CAU)O2 73 nt1.02□□□□□ -2.25
VPS35P34110 YBL100W-CYBL100W-C 120 nt1.02□□□□□ -2.25
VPS35P34110 YOL164W-AYOL164W-A 183 nt1.01□□□□□ -2.25
VPS35P34110 YDL159C-BYDL159C-B 177 nt1□□□□□ -2.25
VPS35P34110 YDR371C-AYDR371C-A 105 nt1□□□□□ -2.25
VPS35P34110 PAU12YGR294W 363 nt1□□□□□ -2.25
VPS35P34110 YLR299C-AYLR299C-A 93 nt1□□□□□ -2.25
VPS35P34110 UTP20YBL004W 7482 nt1□□□□□ -2.25
VPS35P34110 PAU24YBR301W 363 nt0.97□□□□□ -2.25
VPS35P34110 YGR240C-AYGR240C-A 201 nt0.94□□□□□ -2.26
VPS35P34110 tQ(UUG)QtQ(UUG)Q 76 nt0.92□□□□□ -2.26
VPS35P34110 ORC3YLL004W 1851 nt0.92□□□□□ -2.26
VPS35P34110 YDR034C-AYDR034C-A 177 nt0.89□□□□□ -2.27
VPS35P34110 tF(GAA)BtF(GAA)B 73 nt0.88□□□□□ -2.27
VPS35P34110 tF(GAA)FtF(GAA)F 73 nt0.88□□□□□ -2.27
VPS35P34110 tF(GAA)GtF(GAA)G 73 nt0.88□□□□□ -2.27
VPS35P34110 tF(GAA)H1tF(GAA)H1 73 nt0.88□□□□□ -2.27
VPS35P34110 tF(GAA)H2tF(GAA)H2 73 nt0.88□□□□□ -2.27
VPS35P34110 tF(GAA)MtF(GAA)M 73 nt0.88□□□□□ -2.27
VPS35P34110 tF(GAA)P1tF(GAA)P1 73 nt0.88□□□□□ -2.27
VPS35P34110 tF(GAA)P2tF(GAA)P2 73 nt0.88□□□□□ -2.27
VPS35P34110 snR47snR47 99 nt0.87□□□□□ -2.27
VPS35P34110 IQG1YPL242C 4488 nt0.86□□□□□ -2.27
VPS35P34110 MLP1YKR095W 5628 nt0.84□□□□□ -2.27
VPS35P34110 YNL054W-BYNL054W-B 5250 nt0.83□□□□□ -2.28
VPS35P34110 YBL100W-BYBL100W-B 5313 nt0.82□□□□□ -2.28
VPS35P34110 YMR160WYMR160W 2451 nt0.82□□□□□ -2.28
VPS35P34110 YML054C-AYML054C-A 159 nt0.8□□□□□ -2.28
VPS35P34110 YPR159C-AYPR159C-A 102 nt0.79□□□□□ -2.28
VPS35P34110 tT(AGU)BtT(AGU)B 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)CtT(AGU)C 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)DtT(AGU)D 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)HtT(AGU)H 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)I1tT(AGU)I1 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)I2tT(AGU)I2 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)JtT(AGU)J 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)N1tT(AGU)N1 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)N2tT(AGU)N2 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)O1tT(AGU)O1 73 nt0.78□□□□□ -2.28
VPS35P34110 tT(AGU)O2tT(AGU)O2 73 nt0.78□□□□□ -2.28
VPS35P34110 YER090C-AYER090C-A 90 nt0.77□□□□□ -2.29
VPS35P34110 YHR180C-BYHR180C-B 105 nt0.76□□□□□ -2.29
VPS35P34110 snR50snR50 90 nt0.75□□□□□ -2.29
VPS35P34110 YOL014WYOL014W 375 nt0.72□□□□□ -2.29
VPS35P34110 UTP10YJL109C 5310 nt0.71□□□□□ -2.3
VPS35P34110 AI1Q0050 2505 nt0.68□□□□□ -2.3
VPS35P34110 YOR186C-AYOR186C-A 210 nt0.67□□□□□ -2.3
VPS35P34110 YKL145W-AYKL145W-A 93 nt0.66□□□□□ -2.3
VPS35P34110 YMR272W-AYMR272W-A 114 nt0.65□□□□□ -2.31
VPS35P34110 YBR109W-AYBR109W-A 225 nt0.65□□□□□ -2.31
VPS35P34110 RPL41AYDL184C 78 nt0.63□□□□□ -2.31
VPS35P34110 MLP2YIL149C 5040 nt0.62□□□□□ -2.31
VPS35P34110 YBR296C-AYBR296C-A 120 nt0.61□□□□□ -2.31
VPS35P34110 snR67snR67 82 nt0.58□□□□□ -2.32
VPS35P34110 YKL225WYKL225W 348 nt0.56□□□□□ -2.32
VPS35P34110 THO2YNL139C 4794 nt0.55□□□□□ -2.32
VPS35P34110 snR64snR64 101 nt0.54□□□□□ -2.32
VPS35P34110 FMP27YLR454W 7887 nt0.53□□□□□ -2.32
VPS35P34110 snR38snR38 95 nt0.53□□□□□ -2.32
VPS35P34110 ESP1YGR098C 4893 nt0.48□□□□□ -2.33
VPS35P34110 SOV1YMR066W 2697 nt0.47□□□□□ -2.33
VPS35P34110 snR53snR53 91 nt0.43□□□□□ -2.34
VPS35P34110 YML100W-AYML100W-A 174 nt0.4□□□□□ -2.35
VPS35P34110 YOL013W-AYOL013W-A 192 nt0.39□□□□□ -2.35
VPS35P34110 YER078W-AYER078W-A 165 nt0.35□□□□□ -2.35
VPS35P34110 snR128snR128 126 nt0.31□□□□□ -2.36
VPS35P34110 SKI7YOR076C 2244 nt0.3□□□□□ -2.36
VPS35P34110 YDL159W-AYDL159W-A 132 nt0.19□□□□□ -2.38
VPS35P34110 YKL106C-AYKL106C-A 120 nt0.15□□□□□ -2.39
VPS35P34110 YGR122C-AYGR122C-A 129 nt0.13□□□□□ -2.39
VPS35P34110 PAU9YBL108C-A 129 nt0.12□□□□□ -2.39
VPS35P34110 YOR376W-AYOR376W-A 156 nt-0.03□□□□□ -2.41
VPS35P34110 YLR149C-AYLR149C-A 87 nt-0.04□□□□□ -2.42
VPS35P34110 tA(UGC)QtA(UGC)Q 76 nt-0.05□□□□□ -2.42
VPS35P34110 SBH2YER019C-A 267 nt-0.14□□□□□ -2.43
VPS35P34110 YOR316C-AYOR316C-A 210 nt-0.14□□□□□ -2.43
VPS35P34110 YDL114W-AYDL114W-A 114 nt-0.16□□□□□ -2.44
VPS35P34110 tV(UAC)QtV(UAC)Q 76 nt-0.24□□□□□ -2.45
VPS35P34110 YKL096C-BYKL096C-B 150 nt-0.26□□□□□ -2.45
VPS35P34110 YJL113WYJL113W 4647 nt-0.28□□□□□ -2.45
Retrieved 100 of 7,029 protein–RNA pairs in 52.5 ms