Protein–RNA interactions for Protein: P25694

CDC48, Cell division control protein 48, yeastyeast

Known RBP Predictions only

Length 835 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC48P25694 YLL006W-AYLL006W-A 177 nt1.1□□□□□ -2.23
CDC48P25694 YAL037C-AYAL037C-A 93 nt1.09□□□□□ -2.23
CDC48P25694 SEC10YLR166C 2616 nt1.09□□□□□ -2.24
CDC48P25694 MYO1YHR023W 5787 nt1.08□□□□□ -2.24
CDC48P25694 YBR196C-AYBR196C-A 150 nt1.07□□□□□ -2.24
CDC48P25694 EMT1tM(CAU)D 73 nt1.06□□□□□ -2.24
CDC48P25694 EMT5tM(CAU)J1 73 nt1.06□□□□□ -2.24
CDC48P25694 EMT3tM(CAU)J2 73 nt1.06□□□□□ -2.24
CDC48P25694 EMT4tM(CAU)M 73 nt1.06□□□□□ -2.24
CDC48P25694 EMT2tM(CAU)O2 73 nt1.06□□□□□ -2.24
CDC48P25694 YPR117WYPR117W 7470 nt1.05□□□□□ -2.24
CDC48P25694 tS(GCU)Q1tS(GCU)Q1 86 nt1.04□□□□□ -2.24
CDC48P25694 YPL060C-AYPL060C-A 3315 nt1.03□□□□□ -2.24
CDC48P25694 YOL014WYOL014W 375 nt1.02□□□□□ -2.25
CDC48P25694 CSE1YGL238W 2883 nt1.02□□□□□ -2.25
CDC48P25694 YOL083C-AYOL083C-A 141 nt1.01□□□□□ -2.25
CDC48P25694 BUL2YML111W 2763 nt1.01□□□□□ -2.25
CDC48P25694 YIL142C-AYIL142C-A 333 nt1□□□□□ -2.25
CDC48P25694 EST1YLR233C 2100 nt0.99□□□□□ -2.25
CDC48P25694 NIP1YMR309C 2439 nt0.98□□□□□ -2.25
CDC48P25694 snR69snR69 101 nt0.97□□□□□ -2.25
CDC48P25694 tD(GUC)QtD(GUC)Q 75 nt0.97□□□□□ -2.25
CDC48P25694 YBL071C-BYBL071C-B 99 nt0.97□□□□□ -2.25
CDC48P25694 YOR192C-BYOR192C-B 5313 nt0.97□□□□□ -2.25
CDC48P25694 YMR160WYMR160W 2451 nt0.95□□□□□ -2.26
CDC48P25694 RPS26AYGL189C 360 nt0.95□□□□□ -2.26
CDC48P25694 YLR286W-AYLR286W-A 135 nt0.95□□□□□ -2.26
CDC48P25694 PET111YMR257C 2403 nt0.89□□□□□ -2.27
CDC48P25694 YDR371C-AYDR371C-A 105 nt0.89□□□□□ -2.27
CDC48P25694 RDS3YPR094W 324 nt0.89□□□□□ -2.27
CDC48P25694 LTE1YAL024C 4308 nt0.88□□□□□ -2.27
CDC48P25694 YJL077W-AYJL077W-A 87 nt0.88□□□□□ -2.27
CDC48P25694 YKL145W-AYKL145W-A 93 nt0.88□□□□□ -2.27
CDC48P25694 snR62snR62 100 nt0.87□□□□□ -2.27
CDC48P25694 YLL066W-BYLL066W-B 171 nt0.87□□□□□ -2.27
CDC48P25694 YOL164W-AYOL164W-A 183 nt0.86□□□□□ -2.27
CDC48P25694 snR45snR45 172 nt0.85□□□□□ -2.27
CDC48P25694 YDL159C-BYDL159C-B 177 nt0.84□□□□□ -2.27
CDC48P25694 YLR299C-AYLR299C-A 93 nt0.83□□□□□ -2.28
CDC48P25694 YBL100W-CYBL100W-C 120 nt0.81□□□□□ -2.28
CDC48P25694 ORC3YLL004W 1851 nt0.8□□□□□ -2.28
CDC48P25694 YGR240C-AYGR240C-A 201 nt0.78□□□□□ -2.28
CDC48P25694 tQ(UUG)QtQ(UUG)Q 76 nt0.77□□□□□ -2.29
CDC48P25694 YPR159C-AYPR159C-A 102 nt0.76□□□□□ -2.29
CDC48P25694 tT(AGU)BtT(AGU)B 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)CtT(AGU)C 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)DtT(AGU)D 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)HtT(AGU)H 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)I1tT(AGU)I1 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)I2tT(AGU)I2 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)JtT(AGU)J 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)N1tT(AGU)N1 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)N2tT(AGU)N2 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)O1tT(AGU)O1 73 nt0.75□□□□□ -2.29
CDC48P25694 tT(AGU)O2tT(AGU)O2 73 nt0.75□□□□□ -2.29
CDC48P25694 YNL054W-BYNL054W-B 5250 nt0.73□□□□□ -2.29
CDC48P25694 YDR034C-AYDR034C-A 177 nt0.73□□□□□ -2.29
CDC48P25694 YBL100W-BYBL100W-B 5313 nt0.72□□□□□ -2.29
CDC48P25694 YMR272W-AYMR272W-A 114 nt0.72□□□□□ -2.29
CDC48P25694 MLP1YKR095W 5628 nt0.71□□□□□ -2.3
CDC48P25694 snR47snR47 99 nt0.71□□□□□ -2.3
CDC48P25694 AI1Q0050 2505 nt0.69□□□□□ -2.3
CDC48P25694 YER090C-AYER090C-A 90 nt0.67□□□□□ -2.3
CDC48P25694 UTP10YJL109C 5310 nt0.65□□□□□ -2.3
CDC48P25694 YML054C-AYML054C-A 159 nt0.65□□□□□ -2.31
CDC48P25694 FMP27YLR454W 7887 nt0.63□□□□□ -2.31
CDC48P25694 snR50snR50 90 nt0.63□□□□□ -2.31
CDC48P25694 YHR180C-BYHR180C-B 105 nt0.62□□□□□ -2.31
CDC48P25694 THO2YNL139C 4794 nt0.6□□□□□ -2.31
CDC48P25694 IQG1YPL242C 4488 nt0.6□□□□□ -2.31
CDC48P25694 YOR186C-AYOR186C-A 210 nt0.57□□□□□ -2.32
CDC48P25694 YBR109W-AYBR109W-A 225 nt0.55□□□□□ -2.32
CDC48P25694 RPL41AYDL184C 78 nt0.51□□□□□ -2.33
CDC48P25694 YER078W-AYER078W-A 165 nt0.5□□□□□ -2.33
CDC48P25694 YBR296C-AYBR296C-A 120 nt0.49□□□□□ -2.33
CDC48P25694 snR67snR67 82 nt0.47□□□□□ -2.33
CDC48P25694 YKL225WYKL225W 348 nt0.46□□□□□ -2.34
CDC48P25694 snR38snR38 95 nt0.44□□□□□ -2.34
CDC48P25694 SOV1YMR066W 2697 nt0.41□□□□□ -2.34
CDC48P25694 MLP2YIL149C 5040 nt0.41□□□□□ -2.34
CDC48P25694 snR64snR64 101 nt0.41□□□□□ -2.34
CDC48P25694 ESP1YGR098C 4893 nt0.39□□□□□ -2.35
CDC48P25694 YML100W-AYML100W-A 174 nt0.35□□□□□ -2.35
CDC48P25694 YOL013W-AYOL013W-A 192 nt0.33□□□□□ -2.36
CDC48P25694 snR53snR53 91 nt0.32□□□□□ -2.36
CDC48P25694 snR128snR128 126 nt0.25□□□□□ -2.37
CDC48P25694 SKI7YOR076C 2244 nt0.25□□□□□ -2.37
CDC48P25694 YDL159W-AYDL159W-A 132 nt0.14□□□□□ -2.39
CDC48P25694 YKL106C-AYKL106C-A 120 nt0.08□□□□□ -2.4
CDC48P25694 PAU9YBL108C-A 129 nt0.07□□□□□ -2.4
CDC48P25694 YGR122C-AYGR122C-A 129 nt0.05□□□□□ -2.4
CDC48P25694 YOR376W-AYOR376W-A 156 nt-0.04□□□□□ -2.42
CDC48P25694 tA(UGC)QtA(UGC)Q 76 nt-0.05□□□□□ -2.42
CDC48P25694 YLR149C-AYLR149C-A 87 nt-0.08□□□□□ -2.42
CDC48P25694 SBH2YER019C-A 267 nt-0.12□□□□□ -2.43
CDC48P25694 YOR316C-AYOR316C-A 210 nt-0.15□□□□□ -2.43
CDC48P25694 YJL113WYJL113W 4647 nt-0.18□□□□□ -2.44
CDC48P25694 YDL114W-AYDL114W-A 114 nt-0.19□□□□□ -2.44
CDC48P25694 tV(UAC)QtV(UAC)Q 76 nt-0.23□□□□□ -2.45
CDC48P25694 snR161snR161 161 nt-0.29□□□□□ -2.46
Retrieved 100 of 7,029 protein–RNA pairs in 57.9 ms