Protein–RNA interactions for Protein: P20448

HCA4, ATP-dependent RNA helicase HCA4, yeastyeast

Known RBP Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
HCA4P20448 ULP2YIL031W 3105 nt1.16□□□□□ -2.22
HCA4P20448 GLG1YKR058W 1851 nt1.16□□□□□ -2.22
HCA4P20448 YPR117WYPR117W 7470 nt1.16□□□□□ -2.22
HCA4P20448 BEM3YPL115C 3387 nt1.15□□□□□ -2.23
HCA4P20448 YNL054W-BYNL054W-B 5250 nt1.14□□□□□ -2.23
HCA4P20448 YSP1YHR155W 3687 nt1.14□□□□□ -2.23
HCA4P20448 EST1YLR233C 2100 nt1.13□□□□□ -2.23
HCA4P20448 tD(GUC)QtD(GUC)Q 75 nt1.12□□□□□ -2.23
HCA4P20448 snR47snR47 99 nt1.12□□□□□ -2.23
HCA4P20448 SCC2YDR180W 4482 nt1.12□□□□□ -2.23
HCA4P20448 DOP1YDR141C 5097 nt1.1□□□□□ -2.23
HCA4P20448 RKR1YMR247C 4689 nt1.09□□□□□ -2.24
HCA4P20448 snR69snR69 101 nt1.08□□□□□ -2.24
HCA4P20448 YBL100W-CYBL100W-C 120 nt1.08□□□□□ -2.24
HCA4P20448 CSE1YGL238W 2883 nt1.08□□□□□ -2.24
HCA4P20448 EMT1tM(CAU)D 73 nt1.06□□□□□ -2.24
HCA4P20448 EMT5tM(CAU)J1 73 nt1.06□□□□□ -2.24
HCA4P20448 EMT3tM(CAU)J2 73 nt1.06□□□□□ -2.24
HCA4P20448 EMT4tM(CAU)M 73 nt1.06□□□□□ -2.24
HCA4P20448 EMT2tM(CAU)O2 73 nt1.06□□□□□ -2.24
HCA4P20448 LTE1YAL024C 4308 nt1.04□□□□□ -2.24
HCA4P20448 BUL2YML111W 2763 nt1.04□□□□□ -2.24
HCA4P20448 YLR299C-AYLR299C-A 93 nt1.03□□□□□ -2.24
HCA4P20448 PAU24YBR301W 363 nt1.03□□□□□ -2.24
HCA4P20448 YLL006W-AYLL006W-A 177 nt1.02□□□□□ -2.25
HCA4P20448 YDL159C-BYDL159C-B 177 nt1.01□□□□□ -2.25
HCA4P20448 NIP1YMR309C 2439 nt1□□□□□ -2.25
HCA4P20448 snR53snR53 91 nt1□□□□□ -2.25
HCA4P20448 snR64snR64 101 nt0.98□□□□□ -2.25
HCA4P20448 RDS3YPR094W 324 nt0.98□□□□□ -2.25
HCA4P20448 YOR192C-BYOR192C-B 5313 nt0.97□□□□□ -2.25
HCA4P20448 PAU12YGR294W 363 nt0.96□□□□□ -2.26
HCA4P20448 YBR109W-AYBR109W-A 225 nt0.95□□□□□ -2.26
HCA4P20448 YML054C-AYML054C-A 159 nt0.94□□□□□ -2.26
HCA4P20448 YKL225WYKL225W 348 nt0.93□□□□□ -2.26
HCA4P20448 snR38snR38 95 nt0.93□□□□□ -2.26
HCA4P20448 IQG1YPL242C 4488 nt0.89□□□□□ -2.27
HCA4P20448 AI1Q0050 2505 nt0.87□□□□□ -2.27
HCA4P20448 YJL077W-AYJL077W-A 87 nt0.87□□□□□ -2.27
HCA4P20448 tF(GAA)BtF(GAA)B 73 nt0.86□□□□□ -2.27
HCA4P20448 tF(GAA)FtF(GAA)F 73 nt0.86□□□□□ -2.27
HCA4P20448 tF(GAA)GtF(GAA)G 73 nt0.86□□□□□ -2.27
HCA4P20448 tF(GAA)H1tF(GAA)H1 73 nt0.86□□□□□ -2.27
HCA4P20448 tF(GAA)H2tF(GAA)H2 73 nt0.86□□□□□ -2.27
HCA4P20448 tF(GAA)MtF(GAA)M 73 nt0.86□□□□□ -2.27
HCA4P20448 tF(GAA)P1tF(GAA)P1 73 nt0.86□□□□□ -2.27
HCA4P20448 tF(GAA)P2tF(GAA)P2 73 nt0.86□□□□□ -2.27
HCA4P20448 YHR180C-BYHR180C-B 105 nt0.86□□□□□ -2.27
HCA4P20448 YDR371C-AYDR371C-A 105 nt0.84□□□□□ -2.27
HCA4P20448 tQ(UUG)QtQ(UUG)Q 76 nt0.84□□□□□ -2.27
HCA4P20448 UTP20YBL004W 7482 nt0.84□□□□□ -2.28
HCA4P20448 RPL41AYDL184C 78 nt0.83□□□□□ -2.28
HCA4P20448 snR50snR50 90 nt0.83□□□□□ -2.28
HCA4P20448 YDL159W-AYDL159W-A 132 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)BtT(AGU)B 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)CtT(AGU)C 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)DtT(AGU)D 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)HtT(AGU)H 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)I1tT(AGU)I1 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)I2tT(AGU)I2 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)JtT(AGU)J 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)N1tT(AGU)N1 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)N2tT(AGU)N2 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)O1tT(AGU)O1 73 nt0.81□□□□□ -2.28
HCA4P20448 tT(AGU)O2tT(AGU)O2 73 nt0.81□□□□□ -2.28
HCA4P20448 YBR296C-AYBR296C-A 120 nt0.81□□□□□ -2.28
HCA4P20448 YMR160WYMR160W 2451 nt0.81□□□□□ -2.28
HCA4P20448 YER090C-AYER090C-A 90 nt0.8□□□□□ -2.28
HCA4P20448 MLP1YKR095W 5628 nt0.76□□□□□ -2.29
HCA4P20448 PET111YMR257C 2403 nt0.76□□□□□ -2.29
HCA4P20448 YBL100W-BYBL100W-B 5313 nt0.75□□□□□ -2.29
HCA4P20448 YMR272W-AYMR272W-A 114 nt0.74□□□□□ -2.29
HCA4P20448 YLR149C-AYLR149C-A 87 nt0.71□□□□□ -2.3
HCA4P20448 YPR159C-AYPR159C-A 102 nt0.71□□□□□ -2.3
HCA4P20448 YOL014WYOL014W 375 nt0.67□□□□□ -2.3
HCA4P20448 SKI7YOR076C 2244 nt0.66□□□□□ -2.3
HCA4P20448 FMP27YLR454W 7887 nt0.65□□□□□ -2.31
HCA4P20448 YKL145W-AYKL145W-A 93 nt0.65□□□□□ -2.31
HCA4P20448 MLP2YIL149C 5040 nt0.64□□□□□ -2.31
HCA4P20448 YGR122C-AYGR122C-A 129 nt0.63□□□□□ -2.31
HCA4P20448 snR67snR67 82 nt0.61□□□□□ -2.31
HCA4P20448 UTP10YJL109C 5310 nt0.59□□□□□ -2.31
HCA4P20448 THO2YNL139C 4794 nt0.58□□□□□ -2.32
HCA4P20448 YKL096C-BYKL096C-B 150 nt0.52□□□□□ -2.33
HCA4P20448 SOV1YMR066W 2697 nt0.5□□□□□ -2.33
HCA4P20448 ESP1YGR098C 4893 nt0.48□□□□□ -2.33
HCA4P20448 YML100W-AYML100W-A 174 nt0.48□□□□□ -2.33
HCA4P20448 YOR186C-AYOR186C-A 210 nt0.47□□□□□ -2.33
HCA4P20448 YKL106C-AYKL106C-A 120 nt0.41□□□□□ -2.34
HCA4P20448 YER078W-AYER078W-A 165 nt0.35□□□□□ -2.35
HCA4P20448 tV(UAC)QtV(UAC)Q 76 nt0.35□□□□□ -2.35
HCA4P20448 YOR376W-AYOR376W-A 156 nt0.35□□□□□ -2.35
HCA4P20448 snR75snR75 89 nt0.34□□□□□ -2.36
HCA4P20448 YDL114W-AYDL114W-A 114 nt0.33□□□□□ -2.36
HCA4P20448 YOL013W-AYOL013W-A 192 nt0.33□□□□□ -2.36
HCA4P20448 snR128snR128 126 nt0.25□□□□□ -2.37
HCA4P20448 YOR316C-AYOR316C-A 210 nt0.21□□□□□ -2.38
HCA4P20448 PAU9YBL108C-A 129 nt0.17□□□□□ -2.38
HCA4P20448 snR77snR77 88 nt0.16□□□□□ -2.38
HCA4P20448 SBH2YER019C-A 267 nt0.12□□□□□ -2.39
Retrieved 100 of 7,029 protein–RNA pairs in 25.8 ms