Protein–RNA interactions for Protein: P04819

CDC9, DNA ligase 1, yeastyeast

Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC9P04819 RPS26AYGL189C 360 nt0.79□□□□□ -2.28
CDC9P04819 YPR159C-AYPR159C-A 102 nt0.78□□□□□ -2.28
CDC9P04819 snR85snR85 171 nt0.77□□□□□ -2.29
CDC9P04819 YDR371C-AYDR371C-A 105 nt0.77□□□□□ -2.29
CDC9P04819 YNL266WYNL266W 420 nt0.77□□□□□ -2.29
CDC9P04819 UTP20YBL004W 7482 nt0.77□□□□□ -2.29
CDC9P04819 IQG1YPL242C 4488 nt0.76□□□□□ -2.29
CDC9P04819 YMR160WYMR160W 2451 nt0.75□□□□□ -2.29
CDC9P04819 PMP2YEL017C-A 132 nt0.74□□□□□ -2.29
CDC9P04819 RCO1YMR075W 2055 nt0.71□□□□□ -2.3
CDC9P04819 YJL077W-AYJL077W-A 87 nt0.71□□□□□ -2.3
CDC9P04819 SEC10YLR166C 2616 nt0.7□□□□□ -2.3
CDC9P04819 YPL060C-AYPL060C-A 3315 nt0.69□□□□□ -2.3
CDC9P04819 SBH1YER087C-B 249 nt0.68□□□□□ -2.3
CDC9P04819 YBR178WYBR178W 375 nt0.68□□□□□ -2.3
CDC9P04819 snR69snR69 101 nt0.66□□□□□ -2.3
CDC9P04819 YBR196C-AYBR196C-A 150 nt0.66□□□□□ -2.3
CDC9P04819 ORC3YLL004W 1851 nt0.66□□□□□ -2.3
CDC9P04819 EST1YLR233C 2100 nt0.64□□□□□ -2.31
CDC9P04819 snR61snR61 90 nt0.64□□□□□ -2.31
CDC9P04819 tT(AGU)BtT(AGU)B 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)CtT(AGU)C 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)DtT(AGU)D 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)HtT(AGU)H 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)I1tT(AGU)I1 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)I2tT(AGU)I2 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)JtT(AGU)J 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)N1tT(AGU)N1 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)N2tT(AGU)N2 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)O1tT(AGU)O1 73 nt0.63□□□□□ -2.31
CDC9P04819 tT(AGU)O2tT(AGU)O2 73 nt0.63□□□□□ -2.31
CDC9P04819 YMR272W-AYMR272W-A 114 nt0.62□□□□□ -2.31
CDC9P04819 YNL103W-AYNL103W-A 90 nt0.62□□□□□ -2.31
CDC9P04819 MLP2YIL149C 5040 nt0.61□□□□□ -2.31
CDC9P04819 tD(GUC)QtD(GUC)Q 75 nt0.61□□□□□ -2.31
CDC9P04819 RDS3YPR094W 324 nt0.6□□□□□ -2.31
CDC9P04819 YBL100W-BYBL100W-B 5313 nt0.6□□□□□ -2.31
CDC9P04819 YOR186C-AYOR186C-A 210 nt0.59□□□□□ -2.31
CDC9P04819 UTP10YJL109C 5310 nt0.59□□□□□ -2.32
CDC9P04819 TFB5YDR079C-A 219 nt0.54□□□□□ -2.32
CDC9P04819 YNL054W-BYNL054W-B 5250 nt0.53□□□□□ -2.32
CDC9P04819 tQ(UUG)QtQ(UUG)Q 76 nt0.53□□□□□ -2.32
CDC9P04819 AI1Q0050 2505 nt0.5□□□□□ -2.33
CDC9P04819 YGL041C-BYGL041C-B 183 nt0.5□□□□□ -2.33
CDC9P04819 YLR286W-AYLR286W-A 135 nt0.5□□□□□ -2.33
CDC9P04819 YAL037C-AYAL037C-A 93 nt0.49□□□□□ -2.33
CDC9P04819 YDL159C-BYDL159C-B 177 nt0.48□□□□□ -2.33
CDC9P04819 YMR326CYMR326C 309 nt0.48□□□□□ -2.33
CDC9P04819 YLR299C-AYLR299C-A 93 nt0.45□□□□□ -2.34
CDC9P04819 FMP27YLR454W 7887 nt0.45□□□□□ -2.34
CDC9P04819 YER078W-AYER078W-A 165 nt0.42□□□□□ -2.34
CDC9P04819 MYO1YHR023W 5787 nt0.42□□□□□ -2.34
CDC9P04819 snR81snR81 201 nt0.41□□□□□ -2.34
CDC9P04819 YOL083C-AYOL083C-A 141 nt0.4□□□□□ -2.35
CDC9P04819 YER090C-AYER090C-A 90 nt0.38□□□□□ -2.35
CDC9P04819 YHR217CYHR217C 462 nt0.37□□□□□ -2.35
CDC9P04819 YDR524C-AYDR524C-A 120 nt0.35□□□□□ -2.35
CDC9P04819 YOL013W-AYOL013W-A 192 nt0.34□□□□□ -2.36
CDC9P04819 YBL071C-BYBL071C-B 99 nt0.33□□□□□ -2.36
CDC9P04819 YBL109WYBL109W 336 nt0.33□□□□□ -2.36
CDC9P04819 ESP1YGR098C 4893 nt0.33□□□□□ -2.36
CDC9P04819 THO2YNL139C 4794 nt0.32□□□□□ -2.36
CDC9P04819 YBL100W-CYBL100W-C 120 nt0.31□□□□□ -2.36
CDC9P04819 snR50snR50 90 nt0.29□□□□□ -2.36
CDC9P04819 SOV1YMR066W 2697 nt0.28□□□□□ -2.37
CDC9P04819 YOL164W-AYOL164W-A 183 nt0.25□□□□□ -2.37
CDC9P04819 YHR180C-BYHR180C-B 105 nt0.21□□□□□ -2.38
CDC9P04819 snR128snR128 126 nt0.21□□□□□ -2.38
CDC9P04819 snR67snR67 82 nt0.2□□□□□ -2.38
CDC9P04819 YML054C-AYML054C-A 159 nt0.19□□□□□ -2.38
CDC9P04819 tS(GCU)Q1tS(GCU)Q1 86 nt0.18□□□□□ -2.38
CDC9P04819 YGR240C-AYGR240C-A 201 nt0.17□□□□□ -2.38
CDC9P04819 YML100W-AYML100W-A 174 nt0.14□□□□□ -2.39
CDC9P04819 snR62snR62 100 nt0.13□□□□□ -2.39
CDC9P04819 snR45snR45 172 nt0.12□□□□□ -2.39
CDC9P04819 snR47snR47 99 nt0.11□□□□□ -2.39
CDC9P04819 YDL247W-AYDL247W-A 75 nt0.09□□□□□ -2.4
CDC9P04819 RPL41AYDL184C 78 nt0.03□□□□□ -2.4
CDC9P04819 YBR296C-AYBR296C-A 120 nt0.02□□□□□ -2.41
CDC9P04819 YDR034C-AYDR034C-A 177 nt0□□□□□ -2.41
CDC9P04819 YBR109W-AYBR109W-A 225 nt-0.01□□□□□ -2.41
CDC9P04819 YLL066W-BYLL066W-B 171 nt-0.08□□□□□ -2.42
CDC9P04819 PAU9YBL108C-A 129 nt-0.1□□□□□ -2.43
CDC9P04819 SKI7YOR076C 2244 nt-0.13□□□□□ -2.43
CDC9P04819 SBH2YER019C-A 267 nt-0.16□□□□□ -2.44
CDC9P04819 YKL225WYKL225W 348 nt-0.18□□□□□ -2.44
CDC9P04819 snR38snR38 95 nt-0.18□□□□□ -2.44
CDC9P04819 tA(UGC)QtA(UGC)Q 76 nt-0.21□□□□□ -2.44
CDC9P04819 snR64snR64 101 nt-0.33□□□□□ -2.46
CDC9P04819 YKL106C-AYKL106C-A 120 nt-0.33□□□□□ -2.46
CDC9P04819 YJL113WYJL113W 4647 nt-0.41□□□□□ -2.48
CDC9P04819 tT(UGU)G1tT(UGU)G1 72 nt-0.42□□□□□ -2.48
CDC9P04819 tT(UGU)G2tT(UGU)G2 72 nt-0.42□□□□□ -2.48
CDC9P04819 tT(UGU)PtT(UGU)P 72 nt-0.42□□□□□ -2.48
CDC9P04819 snR161snR161 161 nt-0.42□□□□□ -2.48
CDC9P04819 URB1YKL014C 5295 nt-0.45□□□□□ -2.48
CDC9P04819 YOR376W-AYOR376W-A 156 nt-0.48□□□□□ -2.49
CDC9P04819 YHL009W-BYHL009W-B 5409 nt-0.51□□□□□ -2.49
CDC9P04819 YNR077CYNR077C 255 nt-0.51□□□□□ -2.49
CDC9P04819 snR53snR53 91 nt-0.53□□□□□ -2.49
Retrieved 100 of 7,029 protein–RNA pairs in 6.8 ms