Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Cdc40Q9DC48 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cdc40Q9DC48 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cdc40Q9DC48 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cdc40Q9DC48 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cdc40Q9DC48 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Cdc40Q9DC48 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.06■■□□□ 1.12
Cdc40Q9DC48 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cdc40Q9DC48 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Cdc40Q9DC48 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC22.05■■□□□ 1.12
Cdc40Q9DC48 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Cdc40Q9DC48 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.04■■□□□ 1.12
Cdc40Q9DC48 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC22.03■■□□□ 1.12
Cdc40Q9DC48 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
Cdc40Q9DC48 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cdc40Q9DC48 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cdc40Q9DC48 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Cdc40Q9DC48 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cdc40Q9DC48 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Cdc40Q9DC48 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Cdc40Q9DC48 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Cdc40Q9DC48 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC22■■□□□ 1.11
Cdc40Q9DC48 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC22■■□□□ 1.11
Cdc40Q9DC48 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Cdc40Q9DC48 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
Cdc40Q9DC48 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Cdc40Q9DC48 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
Cdc40Q9DC48 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.97■■□□□ 1.11
Cdc40Q9DC48 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cdc40Q9DC48 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.97■■□□□ 1.11
Cdc40Q9DC48 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.97■■□□□ 1.11
Cdc40Q9DC48 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cdc40Q9DC48 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Cdc40Q9DC48 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cdc40Q9DC48 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.96■■□□□ 1.11
Cdc40Q9DC48 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.94■■□□□ 1.1
Cdc40Q9DC48 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cdc40Q9DC48 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Cdc40Q9DC48 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Cdc40Q9DC48 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Cdc40Q9DC48 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.92■■□□□ 1.1
Cdc40Q9DC48 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.91■■□□□ 1.1
Cdc40Q9DC48 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cdc40Q9DC48 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Cdc40Q9DC48 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Cdc40Q9DC48 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cdc40Q9DC48 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
Cdc40Q9DC48 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Cdc40Q9DC48 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
Cdc40Q9DC48 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
Cdc40Q9DC48 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
Cdc40Q9DC48 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Cdc40Q9DC48 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
Cdc40Q9DC48 Gm7432-201ENSMUST00000210343 879 ntBASIC21.88■■□□□ 1.09
Cdc40Q9DC48 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cdc40Q9DC48 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Cdc40Q9DC48 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cdc40Q9DC48 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cdc40Q9DC48 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Cdc40Q9DC48 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Cdc40Q9DC48 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Cdc40Q9DC48 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.85■■□□□ 1.09
Cdc40Q9DC48 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cdc40Q9DC48 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Cdc40Q9DC48 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.84■■□□□ 1.09
Cdc40Q9DC48 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.84■■□□□ 1.09
Cdc40Q9DC48 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Cdc40Q9DC48 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Cdc40Q9DC48 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
Cdc40Q9DC48 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cdc40Q9DC48 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Cdc40Q9DC48 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.81■■□□□ 1.08
Cdc40Q9DC48 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Cdc40Q9DC48 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cdc40Q9DC48 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Cdc40Q9DC48 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Cdc40Q9DC48 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC21.79■■□□□ 1.08
Cdc40Q9DC48 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cdc40Q9DC48 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Cdc40Q9DC48 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.78■■□□□ 1.08
Cdc40Q9DC48 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Cdc40Q9DC48 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Cdc40Q9DC48 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Cdc40Q9DC48 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Cdc40Q9DC48 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cdc40Q9DC48 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cdc40Q9DC48 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cdc40Q9DC48 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC21.75■■□□□ 1.07
Cdc40Q9DC48 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cdc40Q9DC48 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Cdc40Q9DC48 Gm11599-201ENSMUST00000118720 878 ntBASIC21.74■■□□□ 1.07
Cdc40Q9DC48 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cdc40Q9DC48 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.73■■□□□ 1.07
Cdc40Q9DC48 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cdc40Q9DC48 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.72■■□□□ 1.07
Cdc40Q9DC48 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.72■■□□□ 1.07
Cdc40Q9DC48 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cdc40Q9DC48 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cdc40Q9DC48 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cdc40Q9DC48 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms