Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Ddx56Q9D0R4 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
Ddx56Q9D0R4 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
Ddx56Q9D0R4 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
Ddx56Q9D0R4 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
Ddx56Q9D0R4 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Ddx56Q9D0R4 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ddx56Q9D0R4 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Ddx56Q9D0R4 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Ddx56Q9D0R4 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC25.16■■□□□ 1.62
Ddx56Q9D0R4 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Ddx56Q9D0R4 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ddx56Q9D0R4 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
Ddx56Q9D0R4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Ddx56Q9D0R4 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC25.14■■□□□ 1.62
Ddx56Q9D0R4 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Ddx56Q9D0R4 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
Ddx56Q9D0R4 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Ddx56Q9D0R4 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Ddx56Q9D0R4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
Ddx56Q9D0R4 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Ddx56Q9D0R4 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Ddx56Q9D0R4 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Ddx56Q9D0R4 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddx56Q9D0R4 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC25.11■■□□□ 1.61
Ddx56Q9D0R4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddx56Q9D0R4 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Ddx56Q9D0R4 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Ddx56Q9D0R4 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Ddx56Q9D0R4 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Ddx56Q9D0R4 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC25.09■■□□□ 1.61
Ddx56Q9D0R4 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC25.08■■□□□ 1.61
Ddx56Q9D0R4 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
Ddx56Q9D0R4 Gm30023-201ENSMUST00000197970 889 ntBASIC25.06■■□□□ 1.6
Ddx56Q9D0R4 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
Ddx56Q9D0R4 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC25.05■■□□□ 1.6
Ddx56Q9D0R4 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddx56Q9D0R4 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddx56Q9D0R4 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC25.04■■□□□ 1.6
Ddx56Q9D0R4 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC25.04■■□□□ 1.6
Ddx56Q9D0R4 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC25.04■■□□□ 1.6
Ddx56Q9D0R4 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Ddx56Q9D0R4 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Ddx56Q9D0R4 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Ddx56Q9D0R4 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
Ddx56Q9D0R4 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Ddx56Q9D0R4 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Ddx56Q9D0R4 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ddx56Q9D0R4 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Ddx56Q9D0R4 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC25■■□□□ 1.59
Ddx56Q9D0R4 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC25■■□□□ 1.59
Ddx56Q9D0R4 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Ddx56Q9D0R4 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
Ddx56Q9D0R4 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Ddx56Q9D0R4 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Ddx56Q9D0R4 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
Ddx56Q9D0R4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
Ddx56Q9D0R4 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Ddx56Q9D0R4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
Ddx56Q9D0R4 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddx56Q9D0R4 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Ddx56Q9D0R4 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Ddx56Q9D0R4 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Ddx56Q9D0R4 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Ddx56Q9D0R4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Ddx56Q9D0R4 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Ddx56Q9D0R4 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Ddx56Q9D0R4 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Ddx56Q9D0R4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC24.94■■□□□ 1.58
Ddx56Q9D0R4 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddx56Q9D0R4 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddx56Q9D0R4 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Ddx56Q9D0R4 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Ddx56Q9D0R4 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Ddx56Q9D0R4 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC24.92■■□□□ 1.58
Ddx56Q9D0R4 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC24.91■■□□□ 1.58
Ddx56Q9D0R4 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
Ddx56Q9D0R4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC24.91■■□□□ 1.58
Ddx56Q9D0R4 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
Ddx56Q9D0R4 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC24.9■■□□□ 1.58
Ddx56Q9D0R4 Nkain2-201ENSMUST00000092602 558 ntBASIC24.9■■□□□ 1.58
Ddx56Q9D0R4 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC24.89■■□□□ 1.58
Ddx56Q9D0R4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Ddx56Q9D0R4 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Ddx56Q9D0R4 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Ddx56Q9D0R4 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC24.88■■□□□ 1.57
Ddx56Q9D0R4 Gm42809-201ENSMUST00000198429 1138 ntBASIC24.87■■□□□ 1.57
Ddx56Q9D0R4 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
Ddx56Q9D0R4 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Ddx56Q9D0R4 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Ddx56Q9D0R4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Ddx56Q9D0R4 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Ddx56Q9D0R4 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms