Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Rnf220Q6PDX6 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC22.42■■□□□ 1.18
Rnf220Q6PDX6 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Rnf220Q6PDX6 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
Rnf220Q6PDX6 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Rnf220Q6PDX6 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Rnf220Q6PDX6 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC22.4■■□□□ 1.18
Rnf220Q6PDX6 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Rnf220Q6PDX6 Gm26115-201ENSMUST00000175605 87 ntBASIC22.39■■□□□ 1.17
Rnf220Q6PDX6 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Rnf220Q6PDX6 Gm6277-202ENSMUST00000224036 2779 ntBASIC22.38■■□□□ 1.17
Rnf220Q6PDX6 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Rnf220Q6PDX6 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
Rnf220Q6PDX6 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Rnf220Q6PDX6 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Rnf220Q6PDX6 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Rnf220Q6PDX6 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
Rnf220Q6PDX6 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Rnf220Q6PDX6 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Rnf220Q6PDX6 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
Rnf220Q6PDX6 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Rnf220Q6PDX6 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC22.37■■□□□ 1.17
Rnf220Q6PDX6 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Rnf220Q6PDX6 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Rnf220Q6PDX6 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Rnf220Q6PDX6 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Rnf220Q6PDX6 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
Rnf220Q6PDX6 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Rnf220Q6PDX6 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC22.35■■□□□ 1.17
Rnf220Q6PDX6 Gm8109-201ENSMUST00000194076 746 ntBASIC22.35■■□□□ 1.17
Rnf220Q6PDX6 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Rnf220Q6PDX6 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Rnf220Q6PDX6 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Rnf220Q6PDX6 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC22.32■■□□□ 1.16
Rnf220Q6PDX6 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
Rnf220Q6PDX6 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Rnf220Q6PDX6 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Rnf220Q6PDX6 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rnf220Q6PDX6 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rnf220Q6PDX6 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Rnf220Q6PDX6 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Rnf220Q6PDX6 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf220Q6PDX6 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf220Q6PDX6 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf220Q6PDX6 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
Rnf220Q6PDX6 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf220Q6PDX6 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Rnf220Q6PDX6 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC22.29■■□□□ 1.16
Rnf220Q6PDX6 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
Rnf220Q6PDX6 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Rnf220Q6PDX6 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Rnf220Q6PDX6 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf220Q6PDX6 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf220Q6PDX6 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf220Q6PDX6 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Rnf220Q6PDX6 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf220Q6PDX6 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf220Q6PDX6 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf220Q6PDX6 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf220Q6PDX6 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf220Q6PDX6 Peli2-204ENSMUST00000226513 1320 ntBASIC22.26■■□□□ 1.15
Rnf220Q6PDX6 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Rnf220Q6PDX6 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf220Q6PDX6 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
Rnf220Q6PDX6 Gm30346-201ENSMUST00000218641 1699 ntBASIC22.25■■□□□ 1.15
Rnf220Q6PDX6 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf220Q6PDX6 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Rnf220Q6PDX6 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC22.24■■□□□ 1.15
Rnf220Q6PDX6 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Rnf220Q6PDX6 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Rnf220Q6PDX6 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rnf220Q6PDX6 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Rnf220Q6PDX6 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Rnf220Q6PDX6 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
Rnf220Q6PDX6 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Rnf220Q6PDX6 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Rnf220Q6PDX6 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
Rnf220Q6PDX6 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
Rnf220Q6PDX6 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC22.2■■□□□ 1.14
Rnf220Q6PDX6 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Rnf220Q6PDX6 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Rnf220Q6PDX6 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC22.2■■□□□ 1.14
Rnf220Q6PDX6 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Rnf220Q6PDX6 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Rnf220Q6PDX6 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Rnf220Q6PDX6 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Rnf220Q6PDX6 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC22.18■■□□□ 1.14
Rnf220Q6PDX6 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Rnf220Q6PDX6 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Rnf220Q6PDX6 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Rnf220Q6PDX6 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Rnf220Q6PDX6 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
Rnf220Q6PDX6 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Rnf220Q6PDX6 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rnf220Q6PDX6 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Rnf220Q6PDX6 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rnf220Q6PDX6 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Rnf220Q6PDX6 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Rnf220Q6PDX6 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms