Protein–RNA interactions for Protein: Q5R1D2

Trav15-1-dv6-1, T cell receptor alpha variable 15-1-DV6-1 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav15-1-dv6-1Q5R1D2 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav15-1-dv6-1Q5R1D2 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC18.45■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.41■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Trav15-1-dv6-1Q5R1D2 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 AC122428.3-201ENSMUST00000215551 2290 ntBASIC18.39■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.39■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.38■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.36■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav15-1-dv6-1Q5R1D2 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Gm26115-201ENSMUST00000175605 87 ntBASIC18.31■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav15-1-dv6-1Q5R1D2 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trav15-1-dv6-1Q5R1D2 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms