Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
Rfx3P48381 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.41■■□□□ 1.02
Rfx3P48381 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rfx3P48381 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rfx3P48381 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Rfx3P48381 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Rfx3P48381 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC21.4■■□□□ 1.02
Rfx3P48381 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Rfx3P48381 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Rfx3P48381 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
Rfx3P48381 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Rfx3P48381 Gm9397-201ENSMUST00000200125 605 ntBASIC21.39■■□□□ 1.01
Rfx3P48381 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Rfx3P48381 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
Rfx3P48381 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Rfx3P48381 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.38■■□□□ 1.01
Rfx3P48381 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Rfx3P48381 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.36■■□□□ 1.01
Rfx3P48381 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Rfx3P48381 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Rfx3P48381 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.35■■□□□ 1.01
Rfx3P48381 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
Rfx3P48381 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.35■■□□□ 1.01
Rfx3P48381 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.34■■□□□ 1.01
Rfx3P48381 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Rfx3P48381 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Rfx3P48381 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
Rfx3P48381 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.32■■□□□ 1
Rfx3P48381 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.32■■□□□ 1
Rfx3P48381 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rfx3P48381 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Rfx3P48381 Gm24970-201ENSMUST00000175582 82 ntBASIC21.32■■□□□ 1
Rfx3P48381 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21.32■■□□□ 1
Rfx3P48381 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.32■■□□□ 1
Rfx3P48381 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rfx3P48381 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Rfx3P48381 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Rfx3P48381 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Rfx3P48381 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.31■■□□□ 1
Rfx3P48381 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.3■■□□□ 1
Rfx3P48381 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC21.3■■□□□ 1
Rfx3P48381 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rfx3P48381 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Rfx3P48381 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.3■■□□□ 1
Rfx3P48381 Gm45855-201ENSMUST00000212546 880 ntBASIC21.3■■□□□ 1
Rfx3P48381 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rfx3P48381 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Rfx3P48381 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rfx3P48381 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.29■■□□□ 1
Rfx3P48381 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
Rfx3P48381 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Rfx3P48381 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.27■■□□□ 1
Rfx3P48381 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rfx3P48381 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.26■□□□□ 0.99
Rfx3P48381 Pcf11-205ENSMUST00000208255 1720 ntBASIC21.25■□□□□ 0.99
Rfx3P48381 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rfx3P48381 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx3P48381 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Rfx3P48381 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Rfx3P48381 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx3P48381 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx3P48381 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rfx3P48381 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.24■□□□□ 0.99
Rfx3P48381 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rfx3P48381 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Rfx3P48381 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.22■□□□□ 0.99
Rfx3P48381 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rfx3P48381 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Rfx3P48381 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx3P48381 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21.2■□□□□ 0.98
Rfx3P48381 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rfx3P48381 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.2■□□□□ 0.98
Rfx3P48381 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Rfx3P48381 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx3P48381 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx3P48381 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx3P48381 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx3P48381 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Rfx3P48381 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rfx3P48381 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.17■□□□□ 0.98
Rfx3P48381 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx3P48381 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21.17■□□□□ 0.98
Rfx3P48381 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx3P48381 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rfx3P48381 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Rfx3P48381 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Rfx3P48381 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Rfx3P48381 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx3P48381 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
Rfx3P48381 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx3P48381 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Rfx3P48381 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Rfx3P48381 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx3P48381 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx3P48381 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx3P48381 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx3P48381 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Rfx3P48381 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.13■□□□□ 0.97
Rfx3P48381 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx3P48381 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 170.7 ms