Protein–RNA interactions for Protein: P01849

Tcra, T-cell receptor alpha chain C region, mousemouse

Predictions only

Length 138 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TcraP01849 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TcraP01849 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TcraP01849 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TcraP01849 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TcraP01849 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TcraP01849 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TcraP01849 Gm8109-201ENSMUST00000194076 746 ntBASIC17.23■□□□□ 0.35
TcraP01849 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TcraP01849 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TcraP01849 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TcraP01849 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
TcraP01849 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TcraP01849 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TcraP01849 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TcraP01849 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TcraP01849 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TcraP01849 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TcraP01849 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TcraP01849 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TcraP01849 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TcraP01849 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TcraP01849 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TcraP01849 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC17.2■□□□□ 0.34
TcraP01849 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TcraP01849 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
TcraP01849 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TcraP01849 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TcraP01849 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
TcraP01849 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TcraP01849 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TcraP01849 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
TcraP01849 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
TcraP01849 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
TcraP01849 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
TcraP01849 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TcraP01849 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TcraP01849 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TcraP01849 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TcraP01849 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.15■□□□□ 0.34
TcraP01849 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TcraP01849 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.14■□□□□ 0.33
TcraP01849 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TcraP01849 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TcraP01849 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TcraP01849 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
TcraP01849 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TcraP01849 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TcraP01849 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TcraP01849 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TcraP01849 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TcraP01849 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TcraP01849 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.12■□□□□ 0.33
TcraP01849 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TcraP01849 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TcraP01849 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TcraP01849 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TcraP01849 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TcraP01849 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TcraP01849 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TcraP01849 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
TcraP01849 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC17.1■□□□□ 0.33
TcraP01849 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TcraP01849 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TcraP01849 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC17.1■□□□□ 0.33
TcraP01849 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TcraP01849 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
TcraP01849 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TcraP01849 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
TcraP01849 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TcraP01849 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TcraP01849 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC17.07■□□□□ 0.32
TcraP01849 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TcraP01849 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TcraP01849 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
TcraP01849 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TcraP01849 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC17.07■□□□□ 0.32
TcraP01849 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TcraP01849 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TcraP01849 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TcraP01849 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TcraP01849 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TcraP01849 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TcraP01849 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TcraP01849 Il17rd-202ENSMUST00000223942 2186 ntBASIC17.04■□□□□ 0.32
TcraP01849 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TcraP01849 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TcraP01849 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TcraP01849 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TcraP01849 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TcraP01849 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TcraP01849 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TcraP01849 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TcraP01849 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TcraP01849 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TcraP01849 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TcraP01849 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TcraP01849 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.01■□□□□ 0.31
TcraP01849 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TcraP01849 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TcraP01849 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms