Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav16d-dv11A0A075B617 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav16d-dv11A0A075B617 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav16d-dv11A0A075B617 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav16d-dv11A0A075B617 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav16d-dv11A0A075B617 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Trav16d-dv11A0A075B617 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav16d-dv11A0A075B617 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trav16d-dv11A0A075B617 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav16d-dv11A0A075B617 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav16d-dv11A0A075B617 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trav16d-dv11A0A075B617 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav16d-dv11A0A075B617 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav16d-dv11A0A075B617 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trav16d-dv11A0A075B617 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav16d-dv11A0A075B617 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav16d-dv11A0A075B617 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.4■□□□□ 0.38
Trav16d-dv11A0A075B617 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trav16d-dv11A0A075B617 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav16d-dv11A0A075B617 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav16d-dv11A0A075B617 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav16d-dv11A0A075B617 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav16d-dv11A0A075B617 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav16d-dv11A0A075B617 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav16d-dv11A0A075B617 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav16d-dv11A0A075B617 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav16d-dv11A0A075B617 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav16d-dv11A0A075B617 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav16d-dv11A0A075B617 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav16d-dv11A0A075B617 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav16d-dv11A0A075B617 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav16d-dv11A0A075B617 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC17.36■□□□□ 0.37
Trav16d-dv11A0A075B617 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav16d-dv11A0A075B617 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav16d-dv11A0A075B617 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav16d-dv11A0A075B617 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Trav16d-dv11A0A075B617 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav16d-dv11A0A075B617 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav16d-dv11A0A075B617 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Trav16d-dv11A0A075B617 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Trav16d-dv11A0A075B617 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC17.34■□□□□ 0.37
Trav16d-dv11A0A075B617 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC17.34■□□□□ 0.37
Trav16d-dv11A0A075B617 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav16d-dv11A0A075B617 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Trav16d-dv11A0A075B617 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Trav16d-dv11A0A075B617 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav16d-dv11A0A075B617 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC17.33■□□□□ 0.37
Trav16d-dv11A0A075B617 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav16d-dv11A0A075B617 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Trav16d-dv11A0A075B617 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Trav16d-dv11A0A075B617 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Trav16d-dv11A0A075B617 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav16d-dv11A0A075B617 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav16d-dv11A0A075B617 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trav16d-dv11A0A075B617 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC17.32■□□□□ 0.36
Trav16d-dv11A0A075B617 AC122428.3-201ENSMUST00000215551 2290 ntBASIC17.31■□□□□ 0.36
Trav16d-dv11A0A075B617 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav16d-dv11A0A075B617 Gm27322-201ENSMUST00000184007 104 ntBASIC17.31■□□□□ 0.36
Trav16d-dv11A0A075B617 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav16d-dv11A0A075B617 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav16d-dv11A0A075B617 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav16d-dv11A0A075B617 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav16d-dv11A0A075B617 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav16d-dv11A0A075B617 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav16d-dv11A0A075B617 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav16d-dv11A0A075B617 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Trav16d-dv11A0A075B617 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC17.29■□□□□ 0.36
Trav16d-dv11A0A075B617 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav16d-dv11A0A075B617 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trav16d-dv11A0A075B617 Pcf11-205ENSMUST00000208255 1720 ntBASIC17.27■□□□□ 0.36
Trav16d-dv11A0A075B617 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trav16d-dv11A0A075B617 Il17rd-202ENSMUST00000223942 2186 ntBASIC17.27■□□□□ 0.36
Trav16d-dv11A0A075B617 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav16d-dv11A0A075B617 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav16d-dv11A0A075B617 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav16d-dv11A0A075B617 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav16d-dv11A0A075B617 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trav16d-dv11A0A075B617 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC17.26■□□□□ 0.35
Trav16d-dv11A0A075B617 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav16d-dv11A0A075B617 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trav16d-dv11A0A075B617 Gm25262-201ENSMUST00000174934 133 ntBASIC17.24■□□□□ 0.35
Trav16d-dv11A0A075B617 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav16d-dv11A0A075B617 Gm17641-201ENSMUST00000166328 2350 ntBASIC17.24■□□□□ 0.35
Trav16d-dv11A0A075B617 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav16d-dv11A0A075B617 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trav16d-dv11A0A075B617 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav16d-dv11A0A075B617 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trav16d-dv11A0A075B617 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav16d-dv11A0A075B617 Gm17082-201ENSMUST00000166043 1091 ntBASIC17.23■□□□□ 0.35
Trav16d-dv11A0A075B617 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav16d-dv11A0A075B617 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trav16d-dv11A0A075B617 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav16d-dv11A0A075B617 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms