Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
Cdc40Q9DC48 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
Cdc40Q9DC48 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
Cdc40Q9DC48 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC22.41■■□□□ 1.18
Cdc40Q9DC48 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Cdc40Q9DC48 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Cdc40Q9DC48 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Cdc40Q9DC48 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
Cdc40Q9DC48 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Cdc40Q9DC48 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC22.39■■□□□ 1.17
Cdc40Q9DC48 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Cdc40Q9DC48 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC22.39■■□□□ 1.17
Cdc40Q9DC48 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Cdc40Q9DC48 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Cdc40Q9DC48 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC22.38■■□□□ 1.17
Cdc40Q9DC48 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Cdc40Q9DC48 Gm8503-201ENSMUST00000118131 455 ntBASIC22.37■■□□□ 1.17
Cdc40Q9DC48 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Cdc40Q9DC48 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cdc40Q9DC48 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cdc40Q9DC48 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC22.36■■□□□ 1.17
Cdc40Q9DC48 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC22.36■■□□□ 1.17
Cdc40Q9DC48 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cdc40Q9DC48 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cdc40Q9DC48 Gm5987-201ENSMUST00000196433 1151 ntBASIC22.34■■□□□ 1.17
Cdc40Q9DC48 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cdc40Q9DC48 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Cdc40Q9DC48 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cdc40Q9DC48 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.32■■□□□ 1.16
Cdc40Q9DC48 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cdc40Q9DC48 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cdc40Q9DC48 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC22.31■■□□□ 1.16
Cdc40Q9DC48 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cdc40Q9DC48 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC22.29■■□□□ 1.16
Cdc40Q9DC48 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Cdc40Q9DC48 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
Cdc40Q9DC48 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC22.28■■□□□ 1.16
Cdc40Q9DC48 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC22.28■■□□□ 1.16
Cdc40Q9DC48 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Cdc40Q9DC48 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
Cdc40Q9DC48 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Cdc40Q9DC48 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
Cdc40Q9DC48 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Cdc40Q9DC48 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Cdc40Q9DC48 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
Cdc40Q9DC48 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cdc40Q9DC48 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cdc40Q9DC48 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cdc40Q9DC48 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Cdc40Q9DC48 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cdc40Q9DC48 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Cdc40Q9DC48 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Cdc40Q9DC48 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Cdc40Q9DC48 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22.21■■□□□ 1.15
Cdc40Q9DC48 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
Cdc40Q9DC48 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Cdc40Q9DC48 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Cdc40Q9DC48 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cdc40Q9DC48 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Cdc40Q9DC48 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
Cdc40Q9DC48 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Cdc40Q9DC48 Gm42809-201ENSMUST00000198429 1138 ntBASIC22.18■■□□□ 1.14
Cdc40Q9DC48 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Cdc40Q9DC48 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Cdc40Q9DC48 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Cdc40Q9DC48 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Cdc40Q9DC48 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC22.17■■□□□ 1.14
Cdc40Q9DC48 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Nkain2-201ENSMUST00000092602 558 ntBASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Cdc40Q9DC48 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
Cdc40Q9DC48 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.15■■□□□ 1.14
Cdc40Q9DC48 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Cdc40Q9DC48 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Cdc40Q9DC48 Amer2-203ENSMUST00000225247 2662 ntBASIC22.14■■□□□ 1.13
Cdc40Q9DC48 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC22.14■■□□□ 1.13
Cdc40Q9DC48 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Cdc40Q9DC48 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Cdc40Q9DC48 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.13■■□□□ 1.13
Cdc40Q9DC48 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Cdc40Q9DC48 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
Cdc40Q9DC48 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Cdc40Q9DC48 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Cdc40Q9DC48 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Cdc40Q9DC48 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cdc40Q9DC48 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
Cdc40Q9DC48 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cdc40Q9DC48 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cdc40Q9DC48 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
Cdc40Q9DC48 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Cdc40Q9DC48 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cdc40Q9DC48 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cdc40Q9DC48 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cdc40Q9DC48 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Cdc40Q9DC48 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms