Protein–RNA interactions for Protein: Q8K2I2

Cchcr1, Coiled-coil alpha-helical rod protein 1, mousemouse

Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cchcr1Q8K2I2 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Cchcr1Q8K2I2 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Cchcr1Q8K2I2 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC28.78■■■□□ 2.2
Cchcr1Q8K2I2 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Cchcr1Q8K2I2 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Cchcr1Q8K2I2 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Cchcr1Q8K2I2 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
Cchcr1Q8K2I2 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Cchcr1Q8K2I2 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Cchcr1Q8K2I2 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
Cchcr1Q8K2I2 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Cchcr1Q8K2I2 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Cchcr1Q8K2I2 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Cchcr1Q8K2I2 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC28.74■■■□□ 2.19
Cchcr1Q8K2I2 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Cchcr1Q8K2I2 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Cchcr1Q8K2I2 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
Cchcr1Q8K2I2 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Cchcr1Q8K2I2 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
Cchcr1Q8K2I2 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
Cchcr1Q8K2I2 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Cchcr1Q8K2I2 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC28.68■■■□□ 2.18
Cchcr1Q8K2I2 Pcf11-205ENSMUST00000208255 1720 ntBASIC28.67■■■□□ 2.18
Cchcr1Q8K2I2 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Cchcr1Q8K2I2 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
Cchcr1Q8K2I2 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Cchcr1Q8K2I2 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Cchcr1Q8K2I2 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Cchcr1Q8K2I2 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
Cchcr1Q8K2I2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
Cchcr1Q8K2I2 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Cchcr1Q8K2I2 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Cchcr1Q8K2I2 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC28.6■■■□□ 2.17
Cchcr1Q8K2I2 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
Cchcr1Q8K2I2 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC28.58■■■□□ 2.17
Cchcr1Q8K2I2 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
Cchcr1Q8K2I2 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC28.56■■■□□ 2.16
Cchcr1Q8K2I2 Zfp131-205ENSMUST00000223812 663 ntBASIC28.56■■■□□ 2.16
Cchcr1Q8K2I2 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
Cchcr1Q8K2I2 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
Cchcr1Q8K2I2 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Cchcr1Q8K2I2 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Cchcr1Q8K2I2 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Cchcr1Q8K2I2 Gm43863-201ENSMUST00000203822 1192 ntBASIC28.52■■■□□ 2.16
Cchcr1Q8K2I2 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
Cchcr1Q8K2I2 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Cchcr1Q8K2I2 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Cchcr1Q8K2I2 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
Cchcr1Q8K2I2 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Cchcr1Q8K2I2 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC28.5■■■□□ 2.15
Cchcr1Q8K2I2 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC28.5■■■□□ 2.15
Cchcr1Q8K2I2 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Cchcr1Q8K2I2 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC28.47■■■□□ 2.15
Cchcr1Q8K2I2 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.47■■■□□ 2.15
Cchcr1Q8K2I2 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Cchcr1Q8K2I2 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
Cchcr1Q8K2I2 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
Cchcr1Q8K2I2 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC28.46■■■□□ 2.15
Cchcr1Q8K2I2 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Cchcr1Q8K2I2 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC28.45■■■□□ 2.14
Cchcr1Q8K2I2 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Cchcr1Q8K2I2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Cchcr1Q8K2I2 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Cchcr1Q8K2I2 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
Cchcr1Q8K2I2 AC157572.2-201ENSMUST00000226970 908 ntBASIC28.43■■■□□ 2.14
Cchcr1Q8K2I2 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC28.43■■■□□ 2.14
Cchcr1Q8K2I2 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC28.41■■■□□ 2.14
Cchcr1Q8K2I2 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Cchcr1Q8K2I2 Gm9397-201ENSMUST00000200125 605 ntBASIC28.4■■■□□ 2.14
Cchcr1Q8K2I2 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Cchcr1Q8K2I2 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC28.39■■■□□ 2.14
Cchcr1Q8K2I2 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Cchcr1Q8K2I2 Tdp2-203ENSMUST00000223804 1136 ntBASIC28.38■■■□□ 2.13
Cchcr1Q8K2I2 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Cchcr1Q8K2I2 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC28.37■■■□□ 2.13
Cchcr1Q8K2I2 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Cchcr1Q8K2I2 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Cchcr1Q8K2I2 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
Cchcr1Q8K2I2 Gm24970-201ENSMUST00000175582 82 ntBASIC28.36■■■□□ 2.13
Cchcr1Q8K2I2 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC28.36■■■□□ 2.13
Cchcr1Q8K2I2 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Cchcr1Q8K2I2 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Cchcr1Q8K2I2 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
Cchcr1Q8K2I2 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
Cchcr1Q8K2I2 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Cchcr1Q8K2I2 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Cchcr1Q8K2I2 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC28.33■■■□□ 2.13
Cchcr1Q8K2I2 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Cchcr1Q8K2I2 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC28.32■■■□□ 2.12
Cchcr1Q8K2I2 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
Cchcr1Q8K2I2 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC28.32■■■□□ 2.12
Cchcr1Q8K2I2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
Cchcr1Q8K2I2 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.32■■■□□ 2.12
Cchcr1Q8K2I2 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
Cchcr1Q8K2I2 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC28.31■■■□□ 2.12
Cchcr1Q8K2I2 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
Cchcr1Q8K2I2 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
Cchcr1Q8K2I2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Cchcr1Q8K2I2 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
Cchcr1Q8K2I2 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms