Protein–RNA interactions for Protein: Q8BQZ5

Cpsf4, Cleavage and polyadenylation specificity factor subunit 4, mousemouse

Known RBP Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4Q8BQZ5 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Cpsf4Q8BQZ5 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC23.41■■□□□ 1.34
Cpsf4Q8BQZ5 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cpsf4Q8BQZ5 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
Cpsf4Q8BQZ5 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cpsf4Q8BQZ5 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Cpsf4Q8BQZ5 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Cpsf4Q8BQZ5 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Cpsf4Q8BQZ5 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC23.39■■□□□ 1.33
Cpsf4Q8BQZ5 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Cpsf4Q8BQZ5 Gm43863-201ENSMUST00000203822 1192 ntBASIC23.38■■□□□ 1.33
Cpsf4Q8BQZ5 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Cpsf4Q8BQZ5 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Cpsf4Q8BQZ5 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Cpsf4Q8BQZ5 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Cpsf4Q8BQZ5 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Cpsf4Q8BQZ5 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Cpsf4Q8BQZ5 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Cpsf4Q8BQZ5 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC23.36■■□□□ 1.33
Cpsf4Q8BQZ5 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Cpsf4Q8BQZ5 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Cpsf4Q8BQZ5 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Cpsf4Q8BQZ5 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC23.35■■□□□ 1.33
Cpsf4Q8BQZ5 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Cpsf4Q8BQZ5 Fezf2-202ENSMUST00000224023 1917 ntBASIC23.34■■□□□ 1.33
Cpsf4Q8BQZ5 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Cpsf4Q8BQZ5 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Cpsf4Q8BQZ5 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC23.33■■□□□ 1.33
Cpsf4Q8BQZ5 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cpsf4Q8BQZ5 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cpsf4Q8BQZ5 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cpsf4Q8BQZ5 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC23.31■■□□□ 1.32
Cpsf4Q8BQZ5 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cpsf4Q8BQZ5 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC23.31■■□□□ 1.32
Cpsf4Q8BQZ5 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC23.3■■□□□ 1.32
Cpsf4Q8BQZ5 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC23.3■■□□□ 1.32
Cpsf4Q8BQZ5 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Cpsf4Q8BQZ5 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cpsf4Q8BQZ5 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Cpsf4Q8BQZ5 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Cpsf4Q8BQZ5 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC23.27■■□□□ 1.32
Cpsf4Q8BQZ5 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Cpsf4Q8BQZ5 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC23.27■■□□□ 1.31
Cpsf4Q8BQZ5 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC23.26■■□□□ 1.31
Cpsf4Q8BQZ5 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Cpsf4Q8BQZ5 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf4Q8BQZ5 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Cpsf4Q8BQZ5 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Cpsf4Q8BQZ5 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf4Q8BQZ5 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf4Q8BQZ5 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Cpsf4Q8BQZ5 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cpsf4Q8BQZ5 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Cpsf4Q8BQZ5 AC157572.2-201ENSMUST00000226970 908 ntBASIC23.22■■□□□ 1.31
Cpsf4Q8BQZ5 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf4Q8BQZ5 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf4Q8BQZ5 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Cpsf4Q8BQZ5 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.21■■□□□ 1.31
Cpsf4Q8BQZ5 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC23.21■■□□□ 1.31
Cpsf4Q8BQZ5 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf4Q8BQZ5 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cpsf4Q8BQZ5 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf4Q8BQZ5 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf4Q8BQZ5 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf4Q8BQZ5 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cpsf4Q8BQZ5 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf4Q8BQZ5 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Cpsf4Q8BQZ5 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cpsf4Q8BQZ5 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Cpsf4Q8BQZ5 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
Cpsf4Q8BQZ5 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf4Q8BQZ5 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf4Q8BQZ5 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Cpsf4Q8BQZ5 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Cpsf4Q8BQZ5 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf4Q8BQZ5 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cpsf4Q8BQZ5 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cpsf4Q8BQZ5 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cpsf4Q8BQZ5 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Cpsf4Q8BQZ5 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cpsf4Q8BQZ5 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cpsf4Q8BQZ5 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Cpsf4Q8BQZ5 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cpsf4Q8BQZ5 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Cpsf4Q8BQZ5 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Cpsf4Q8BQZ5 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Cpsf4Q8BQZ5 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC23.07■■□□□ 1.28
Cpsf4Q8BQZ5 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Cpsf4Q8BQZ5 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cpsf4Q8BQZ5 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
Cpsf4Q8BQZ5 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Cpsf4Q8BQZ5 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC23.03■■□□□ 1.28
Cpsf4Q8BQZ5 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Cpsf4Q8BQZ5 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
Cpsf4Q8BQZ5 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Cpsf4Q8BQZ5 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Cpsf4Q8BQZ5 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Cpsf4Q8BQZ5 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Cpsf4Q8BQZ5 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC23.02■■□□□ 1.28
Cpsf4Q8BQZ5 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms