Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC25.96■■□□□ 1.75
Shkbp1Q6P7W2 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC25.96■■□□□ 1.75
Shkbp1Q6P7W2 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC25.96■■□□□ 1.75
Shkbp1Q6P7W2 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC25.96■■□□□ 1.75
Shkbp1Q6P7W2 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC25.95■■□□□ 1.74
Shkbp1Q6P7W2 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC25.95■■□□□ 1.74
Shkbp1Q6P7W2 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Shkbp1Q6P7W2 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Shkbp1Q6P7W2 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Shkbp1Q6P7W2 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Shkbp1Q6P7W2 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Shkbp1Q6P7W2 Gm7432-201ENSMUST00000210343 879 ntBASIC25.93■■□□□ 1.74
Shkbp1Q6P7W2 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC25.93■■□□□ 1.74
Shkbp1Q6P7W2 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC25.92■■□□□ 1.74
Shkbp1Q6P7W2 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC25.92■■□□□ 1.74
Shkbp1Q6P7W2 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Shkbp1Q6P7W2 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC25.91■■□□□ 1.74
Shkbp1Q6P7W2 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Shkbp1Q6P7W2 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Shkbp1Q6P7W2 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC25.89■■□□□ 1.74
Shkbp1Q6P7W2 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Shkbp1Q6P7W2 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Shkbp1Q6P7W2 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Shkbp1Q6P7W2 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC25.85■■□□□ 1.73
Shkbp1Q6P7W2 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Shkbp1Q6P7W2 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC25.84■■□□□ 1.73
Shkbp1Q6P7W2 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC25.84■■□□□ 1.73
Shkbp1Q6P7W2 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
Shkbp1Q6P7W2 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Shkbp1Q6P7W2 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Shkbp1Q6P7W2 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Shkbp1Q6P7W2 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC25.81■■□□□ 1.72
Shkbp1Q6P7W2 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Shkbp1Q6P7W2 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Shkbp1Q6P7W2 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
Shkbp1Q6P7W2 Gm11599-201ENSMUST00000118720 878 ntBASIC25.77■■□□□ 1.72
Shkbp1Q6P7W2 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Shkbp1Q6P7W2 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC25.77■■□□□ 1.72
Shkbp1Q6P7W2 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
Shkbp1Q6P7W2 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC25.76■■□□□ 1.71
Shkbp1Q6P7W2 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC25.76■■□□□ 1.71
Shkbp1Q6P7W2 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Shkbp1Q6P7W2 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
Shkbp1Q6P7W2 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC25.75■■□□□ 1.71
Shkbp1Q6P7W2 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Shkbp1Q6P7W2 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC25.74■■□□□ 1.71
Shkbp1Q6P7W2 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
Shkbp1Q6P7W2 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Shkbp1Q6P7W2 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
Shkbp1Q6P7W2 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC25.73■■□□□ 1.71
Shkbp1Q6P7W2 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC25.72■■□□□ 1.71
Shkbp1Q6P7W2 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Shkbp1Q6P7W2 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Shkbp1Q6P7W2 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
Shkbp1Q6P7W2 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
Shkbp1Q6P7W2 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Shkbp1Q6P7W2 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC25.69■■□□□ 1.7
Shkbp1Q6P7W2 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
Shkbp1Q6P7W2 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Shkbp1Q6P7W2 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Shkbp1Q6P7W2 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Shkbp1Q6P7W2 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Shkbp1Q6P7W2 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC25.66■■□□□ 1.7
Shkbp1Q6P7W2 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Shkbp1Q6P7W2 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
Shkbp1Q6P7W2 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Shkbp1Q6P7W2 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Shkbp1Q6P7W2 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC25.65■■□□□ 1.7
Shkbp1Q6P7W2 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
Shkbp1Q6P7W2 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC25.64■■□□□ 1.69
Shkbp1Q6P7W2 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.69
Shkbp1Q6P7W2 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
Shkbp1Q6P7W2 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Shkbp1Q6P7W2 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
Shkbp1Q6P7W2 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Shkbp1Q6P7W2 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC25.62■■□□□ 1.69
Shkbp1Q6P7W2 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Shkbp1Q6P7W2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
Shkbp1Q6P7W2 Gm30023-201ENSMUST00000197970 889 ntBASIC25.61■■□□□ 1.69
Shkbp1Q6P7W2 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Shkbp1Q6P7W2 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC25.61■■□□□ 1.69
Shkbp1Q6P7W2 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
Shkbp1Q6P7W2 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
Shkbp1Q6P7W2 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC25.6■■□□□ 1.69
Shkbp1Q6P7W2 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
Shkbp1Q6P7W2 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
Shkbp1Q6P7W2 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Shkbp1Q6P7W2 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC25.57■■□□□ 1.68
Shkbp1Q6P7W2 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC25.57■■□□□ 1.68
Shkbp1Q6P7W2 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Shkbp1Q6P7W2 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
Shkbp1Q6P7W2 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Shkbp1Q6P7W2 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Shkbp1Q6P7W2 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Shkbp1Q6P7W2 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
Shkbp1Q6P7W2 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC25.53■■□□□ 1.68
Shkbp1Q6P7W2 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Shkbp1Q6P7W2 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Shkbp1Q6P7W2 Pcf11-205ENSMUST00000208255 1720 ntBASIC25.52■■□□□ 1.68
Shkbp1Q6P7W2 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms