Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col7a1Q63870 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC21.41■■□□□ 1.02
Col7a1Q63870 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col7a1Q63870 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Col7a1Q63870 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC21.4■■□□□ 1.02
Col7a1Q63870 Gm12366-201ENSMUST00000121722 873 ntBASIC21.4■■□□□ 1.02
Col7a1Q63870 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC21.4■■□□□ 1.02
Col7a1Q63870 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC21.4■■□□□ 1.02
Col7a1Q63870 Gm5786-201ENSMUST00000085368 882 ntBASIC21.4■■□□□ 1.02
Col7a1Q63870 Gm6345-201ENSMUST00000180378 1691 ntBASIC21.4■■□□□ 1.02
Col7a1Q63870 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col7a1Q63870 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
Col7a1Q63870 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Col7a1Q63870 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC21.37■■□□□ 1.01
Col7a1Q63870 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col7a1Q63870 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Col7a1Q63870 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.37■■□□□ 1.01
Col7a1Q63870 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col7a1Q63870 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col7a1Q63870 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col7a1Q63870 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
Col7a1Q63870 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col7a1Q63870 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col7a1Q63870 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col7a1Q63870 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col7a1Q63870 Gm4799-201ENSMUST00000095396 657 ntBASIC21.35■■□□□ 1.01
Col7a1Q63870 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
Col7a1Q63870 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.35■■□□□ 1.01
Col7a1Q63870 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col7a1Q63870 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col7a1Q63870 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Col7a1Q63870 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col7a1Q63870 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Col7a1Q63870 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.32■■□□□ 1
Col7a1Q63870 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col7a1Q63870 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col7a1Q63870 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Col7a1Q63870 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col7a1Q63870 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col7a1Q63870 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.29■■□□□ 1
Col7a1Q63870 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Col7a1Q63870 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC21.28■■□□□ 1
Col7a1Q63870 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col7a1Q63870 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col7a1Q63870 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col7a1Q63870 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.28■■□□□ 1
Col7a1Q63870 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col7a1Q63870 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.27■■□□□ 1
Col7a1Q63870 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col7a1Q63870 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col7a1Q63870 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col7a1Q63870 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC21.26■□□□□ 0.99
Col7a1Q63870 Scarna2-201ENSMUST00000157560 414 ntBASIC21.26■□□□□ 0.99
Col7a1Q63870 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col7a1Q63870 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.25■□□□□ 0.99
Col7a1Q63870 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Col7a1Q63870 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Col7a1Q63870 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC21.23■□□□□ 0.99
Col7a1Q63870 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col7a1Q63870 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col7a1Q63870 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC21.22■□□□□ 0.99
Col7a1Q63870 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Col7a1Q63870 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
Col7a1Q63870 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.21■□□□□ 0.99
Col7a1Q63870 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col7a1Q63870 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col7a1Q63870 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC21.2■□□□□ 0.98
Col7a1Q63870 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col7a1Q63870 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col7a1Q63870 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col7a1Q63870 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.16■□□□□ 0.98
Col7a1Q63870 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC21.15■□□□□ 0.98
Col7a1Q63870 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Col7a1Q63870 Gm9806-201ENSMUST00000051080 552 ntBASIC21.14■□□□□ 0.97
Col7a1Q63870 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
Col7a1Q63870 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC21.13■□□□□ 0.97
Col7a1Q63870 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col7a1Q63870 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col7a1Q63870 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col7a1Q63870 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col7a1Q63870 Gm11687-201ENSMUST00000118911 886 ntBASIC21.11■□□□□ 0.97
Col7a1Q63870 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col7a1Q63870 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col7a1Q63870 Gm7332-201ENSMUST00000118351 454 ntBASIC21.1■□□□□ 0.97
Col7a1Q63870 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col7a1Q63870 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Col7a1Q63870 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC21.08■□□□□ 0.97
Col7a1Q63870 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.08■□□□□ 0.97
Col7a1Q63870 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col7a1Q63870 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.08■□□□□ 0.96
Col7a1Q63870 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col7a1Q63870 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col7a1Q63870 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col7a1Q63870 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col7a1Q63870 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col7a1Q63870 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col7a1Q63870 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.05■□□□□ 0.96
Col7a1Q63870 Gm16437-201ENSMUST00000025669 507 ntBASIC21.05■□□□□ 0.96
Col7a1Q63870 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col7a1Q63870 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms