Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Foxc1Q61572 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Foxc1Q61572 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Foxc1Q61572 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Foxc1Q61572 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Foxc1Q61572 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Foxc1Q61572 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Foxc1Q61572 Gm9939-201ENSMUST00000067161 1154 ntBASIC17.55■□□□□ 0.4
Foxc1Q61572 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC17.54■□□□□ 0.4
Foxc1Q61572 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Foxc1Q61572 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Foxc1Q61572 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Foxc1Q61572 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Foxc1Q61572 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Foxc1Q61572 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Foxc1Q61572 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Foxc1Q61572 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC17.49■□□□□ 0.39
Foxc1Q61572 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Foxc1Q61572 Gm6821-201ENSMUST00000107540 542 ntBASIC17.49■□□□□ 0.39
Foxc1Q61572 Gm5987-201ENSMUST00000196433 1151 ntBASIC17.49■□□□□ 0.39
Foxc1Q61572 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Foxc1Q61572 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Foxc1Q61572 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC17.48■□□□□ 0.39
Foxc1Q61572 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Foxc1Q61572 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC17.47■□□□□ 0.39
Foxc1Q61572 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Foxc1Q61572 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC17.47■□□□□ 0.39
Foxc1Q61572 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Foxc1Q61572 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Foxc1Q61572 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Foxc1Q61572 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC17.46■□□□□ 0.39
Foxc1Q61572 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC17.45■□□□□ 0.38
Foxc1Q61572 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
Foxc1Q61572 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Foxc1Q61572 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC17.44■□□□□ 0.38
Foxc1Q61572 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Foxc1Q61572 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Foxc1Q61572 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Foxc1Q61572 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Foxc1Q61572 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Foxc1Q61572 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Foxc1Q61572 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Foxc1Q61572 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Foxc1Q61572 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC17.41■□□□□ 0.38
Foxc1Q61572 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Foxc1Q61572 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Foxc1Q61572 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Foxc1Q61572 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Foxc1Q61572 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Foxc1Q61572 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC17.4■□□□□ 0.38
Foxc1Q61572 Gm8503-201ENSMUST00000118131 455 ntBASIC17.39■□□□□ 0.37
Foxc1Q61572 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Foxc1Q61572 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Foxc1Q61572 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Foxc1Q61572 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Foxc1Q61572 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Foxc1Q61572 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Foxc1Q61572 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Foxc1Q61572 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Foxc1Q61572 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Foxc1Q61572 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Foxc1Q61572 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Foxc1Q61572 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Foxc1Q61572 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Foxc1Q61572 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Foxc1Q61572 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC17.36■□□□□ 0.37
Foxc1Q61572 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Foxc1Q61572 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Foxc1Q61572 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Foxc1Q61572 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC17.34■□□□□ 0.37
Foxc1Q61572 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Foxc1Q61572 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Foxc1Q61572 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Foxc1Q61572 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Foxc1Q61572 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Foxc1Q61572 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Foxc1Q61572 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Foxc1Q61572 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Foxc1Q61572 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Foxc1Q61572 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Foxc1Q61572 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Foxc1Q61572 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Foxc1Q61572 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Foxc1Q61572 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Foxc1Q61572 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Foxc1Q61572 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Foxc1Q61572 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Foxc1Q61572 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Foxc1Q61572 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Foxc1Q61572 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Foxc1Q61572 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Foxc1Q61572 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Foxc1Q61572 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Foxc1Q61572 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Foxc1Q61572 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Foxc1Q61572 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Foxc1Q61572 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC17.28■□□□□ 0.36
Foxc1Q61572 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Foxc1Q61572 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Foxc1Q61572 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms