Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21.77■■□□□ 1.08
Rfx3P48381 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rfx3P48381 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx3P48381 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Rfx3P48381 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Rfx3P48381 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rfx3P48381 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
Rfx3P48381 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rfx3P48381 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx3P48381 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx3P48381 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.72■■□□□ 1.07
Rfx3P48381 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rfx3P48381 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx3P48381 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx3P48381 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rfx3P48381 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Rfx3P48381 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx3P48381 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rfx3P48381 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Rfx3P48381 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.68■■□□□ 1.06
Rfx3P48381 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx3P48381 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.68■■□□□ 1.06
Rfx3P48381 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rfx3P48381 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Rfx3P48381 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rfx3P48381 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rfx3P48381 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rfx3P48381 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rfx3P48381 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.64■■□□□ 1.06
Rfx3P48381 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Rfx3P48381 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Rfx3P48381 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Rfx3P48381 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Rfx3P48381 Zfp131-205ENSMUST00000223812 663 ntBASIC21.61■■□□□ 1.05
Rfx3P48381 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Rfx3P48381 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.6■■□□□ 1.05
Rfx3P48381 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Rfx3P48381 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Rfx3P48381 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Rfx3P48381 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
Rfx3P48381 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Rfx3P48381 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rfx3P48381 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Rfx3P48381 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Rfx3P48381 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
Rfx3P48381 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Rfx3P48381 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Rfx3P48381 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
Rfx3P48381 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Rfx3P48381 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx3P48381 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rfx3P48381 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC21.53■■□□□ 1.04
Rfx3P48381 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rfx3P48381 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Rfx3P48381 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC21.51■■□□□ 1.03
Rfx3P48381 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.5■■□□□ 1.03
Rfx3P48381 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Rfx3P48381 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx3P48381 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx3P48381 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rfx3P48381 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.48■■□□□ 1.03
Rfx3P48381 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rfx3P48381 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Rfx3P48381 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21.47■■□□□ 1.03
Rfx3P48381 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rfx3P48381 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rfx3P48381 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rfx3P48381 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.46■■□□□ 1.03
Rfx3P48381 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.46■■□□□ 1.03
Rfx3P48381 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Rfx3P48381 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rfx3P48381 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rfx3P48381 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rfx3P48381 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Rfx3P48381 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Rfx3P48381 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Rfx3P48381 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Rfx3P48381 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms