Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC27.52■■■□□ 2
Pcdha4O88689 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■■□□ 2
Pcdha4O88689 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Pcdha4O88689 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Pcdha4O88689 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC27.5■■□□□ 1.99
Pcdha4O88689 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
Pcdha4O88689 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Pcdha4O88689 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Pcdha4O88689 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Pcdha4O88689 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
Pcdha4O88689 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
Pcdha4O88689 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdha4O88689 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdha4O88689 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
Pcdha4O88689 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Pcdha4O88689 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC27.46■■□□□ 1.99
Pcdha4O88689 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
Pcdha4O88689 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC27.44■■□□□ 1.98
Pcdha4O88689 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
Pcdha4O88689 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Pcdha4O88689 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Pcdha4O88689 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Pcdha4O88689 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Pcdha4O88689 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC27.43■■□□□ 1.98
Pcdha4O88689 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
Pcdha4O88689 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC27.42■■□□□ 1.98
Pcdha4O88689 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Pcdha4O88689 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Pcdha4O88689 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Pcdha4O88689 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC27.4■■□□□ 1.98
Pcdha4O88689 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdha4O88689 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdha4O88689 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdha4O88689 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC27.38■■□□□ 1.97
Pcdha4O88689 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
Pcdha4O88689 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
Pcdha4O88689 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
Pcdha4O88689 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC27.37■■□□□ 1.97
Pcdha4O88689 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Pcdha4O88689 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
Pcdha4O88689 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC27.35■■□□□ 1.97
Pcdha4O88689 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
Pcdha4O88689 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Pcdha4O88689 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Pcdha4O88689 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Pcdha4O88689 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Pcdha4O88689 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC27.32■■□□□ 1.96
Pcdha4O88689 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
Pcdha4O88689 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Pcdha4O88689 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC27.31■■□□□ 1.96
Pcdha4O88689 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
Pcdha4O88689 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Pcdha4O88689 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Pcdha4O88689 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
Pcdha4O88689 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
Pcdha4O88689 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
Pcdha4O88689 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
Pcdha4O88689 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
Pcdha4O88689 Gm9939-201ENSMUST00000067161 1154 ntBASIC27.24■■□□□ 1.95
Pcdha4O88689 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Pcdha4O88689 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
Pcdha4O88689 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC27.23■■□□□ 1.95
Pcdha4O88689 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
Pcdha4O88689 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Pcdha4O88689 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Pcdha4O88689 Pcf11-205ENSMUST00000208255 1720 ntBASIC27.22■■□□□ 1.95
Pcdha4O88689 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC27.21■■□□□ 1.95
Pcdha4O88689 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
Pcdha4O88689 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
Pcdha4O88689 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Pcdha4O88689 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
Pcdha4O88689 Gm42809-201ENSMUST00000198429 1138 ntBASIC27.18■■□□□ 1.94
Pcdha4O88689 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Pcdha4O88689 Amer2-203ENSMUST00000225247 2662 ntBASIC27.17■■□□□ 1.94
Pcdha4O88689 Nkain2-201ENSMUST00000092602 558 ntBASIC27.16■■□□□ 1.94
Pcdha4O88689 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Pcdha4O88689 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC27.15■■□□□ 1.94
Pcdha4O88689 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC27.15■■□□□ 1.94
Pcdha4O88689 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Pcdha4O88689 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Pcdha4O88689 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC27.13■■□□□ 1.93
Pcdha4O88689 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
Pcdha4O88689 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC27.13■■□□□ 1.93
Pcdha4O88689 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC27.13■■□□□ 1.93
Pcdha4O88689 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
Pcdha4O88689 Gm6821-201ENSMUST00000107540 542 ntBASIC27.1■■□□□ 1.93
Pcdha4O88689 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Pcdha4O88689 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
Pcdha4O88689 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Pcdha4O88689 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC27.08■■□□□ 1.93
Pcdha4O88689 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC27.07■■□□□ 1.92
Pcdha4O88689 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Pcdha4O88689 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
Pcdha4O88689 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC27.06■■□□□ 1.92
Pcdha4O88689 Gm8503-201ENSMUST00000118131 455 ntBASIC27.06■■□□□ 1.92
Pcdha4O88689 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Pcdha4O88689 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Pcdha4O88689 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC27.04■■□□□ 1.92
Pcdha4O88689 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
Pcdha4O88689 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC27.04■■□□□ 1.92
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms