Protein–RNA interactions for Protein: Q6P5D8

Smchd1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, mousemouse

Known RBP Predictions only

Length 2,007 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smchd1Q6P5D8 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.32■□□□□ 0.84
Smchd1Q6P5D8 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Smchd1Q6P5D8 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smchd1Q6P5D8 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Smchd1Q6P5D8 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.32■□□□□ 0.84
Smchd1Q6P5D8 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Smchd1Q6P5D8 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Gm43231-201ENSMUST00000202960 2258 ntBASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Smchd1Q6P5D8 Nrn1-203ENSMUST00000223611 1443 ntBASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 BC021767-201ENSMUST00000126387 1716 ntBASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Smchd1Q6P5D8 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Smchd1Q6P5D8 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Smchd1Q6P5D8 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smchd1Q6P5D8 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smchd1Q6P5D8 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smchd1Q6P5D8 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Smchd1Q6P5D8 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC20.27■□□□□ 0.84
Smchd1Q6P5D8 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Smchd1Q6P5D8 Gm29241-201ENSMUST00000189260 1096 ntBASIC20.27■□□□□ 0.84
Smchd1Q6P5D8 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Smchd1Q6P5D8 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Smchd1Q6P5D8 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Mir1199-201ENSMUST00000117015 119 ntBASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Smchd1Q6P5D8 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Smchd1Q6P5D8 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Mir7071-201ENSMUST00000184847 69 ntBASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Smchd1Q6P5D8 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Smchd1Q6P5D8 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms