Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC27.09■■□□□ 1.93
Prpf40aQ9R1C7 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Prpf40aQ9R1C7 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Prpf40aQ9R1C7 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
Prpf40aQ9R1C7 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
Prpf40aQ9R1C7 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27.07■■□□□ 1.92
Prpf40aQ9R1C7 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Prpf40aQ9R1C7 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Prpf40aQ9R1C7 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
Prpf40aQ9R1C7 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Prpf40aQ9R1C7 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Prpf40aQ9R1C7 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Prpf40aQ9R1C7 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.92
Prpf40aQ9R1C7 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Prpf40aQ9R1C7 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Prpf40aQ9R1C7 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC27■■□□□ 1.91
Prpf40aQ9R1C7 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Prpf40aQ9R1C7 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Prpf40aQ9R1C7 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Prpf40aQ9R1C7 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Prpf40aQ9R1C7 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Prpf40aQ9R1C7 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC26.98■■□□□ 1.91
Prpf40aQ9R1C7 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Prpf40aQ9R1C7 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC26.97■■□□□ 1.91
Prpf40aQ9R1C7 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.97■■□□□ 1.91
Prpf40aQ9R1C7 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Prpf40aQ9R1C7 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.91
Prpf40aQ9R1C7 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
Prpf40aQ9R1C7 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Prpf40aQ9R1C7 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Prpf40aQ9R1C7 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Prpf40aQ9R1C7 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC26.92■■□□□ 1.9
Prpf40aQ9R1C7 Amer2-203ENSMUST00000225247 2662 ntBASIC26.92■■□□□ 1.9
Prpf40aQ9R1C7 Gm9397-201ENSMUST00000200125 605 ntBASIC26.92■■□□□ 1.9
Prpf40aQ9R1C7 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC26.91■■□□□ 1.9
Prpf40aQ9R1C7 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC26.91■■□□□ 1.9
Prpf40aQ9R1C7 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Prpf40aQ9R1C7 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Prpf40aQ9R1C7 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC26.89■■□□□ 1.9
Prpf40aQ9R1C7 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
Prpf40aQ9R1C7 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Prpf40aQ9R1C7 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Prpf40aQ9R1C7 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC26.88■■□□□ 1.89
Prpf40aQ9R1C7 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.87■■□□□ 1.89
Prpf40aQ9R1C7 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
Prpf40aQ9R1C7 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC26.86■■□□□ 1.89
Prpf40aQ9R1C7 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Prpf40aQ9R1C7 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Prpf40aQ9R1C7 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC26.84■■□□□ 1.89
Prpf40aQ9R1C7 Gm45855-201ENSMUST00000212546 880 ntBASIC26.84■■□□□ 1.89
Prpf40aQ9R1C7 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Prpf40aQ9R1C7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Prpf40aQ9R1C7 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Prpf40aQ9R1C7 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC26.82■■□□□ 1.88
Prpf40aQ9R1C7 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40aQ9R1C7 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40aQ9R1C7 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40aQ9R1C7 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Prpf40aQ9R1C7 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
Prpf40aQ9R1C7 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Prpf40aQ9R1C7 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Prpf40aQ9R1C7 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.79■■□□□ 1.88
Prpf40aQ9R1C7 Gm24970-201ENSMUST00000175582 82 ntBASIC26.78■■□□□ 1.88
Prpf40aQ9R1C7 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Prpf40aQ9R1C7 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Prpf40aQ9R1C7 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Prpf40aQ9R1C7 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC26.78■■□□□ 1.88
Prpf40aQ9R1C7 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC26.77■■□□□ 1.88
Prpf40aQ9R1C7 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
Prpf40aQ9R1C7 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Prpf40aQ9R1C7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC26.76■■□□□ 1.87
Prpf40aQ9R1C7 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
Prpf40aQ9R1C7 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.75■■□□□ 1.87
Prpf40aQ9R1C7 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Prpf40aQ9R1C7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
Prpf40aQ9R1C7 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
Prpf40aQ9R1C7 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
Prpf40aQ9R1C7 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Prpf40aQ9R1C7 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Prpf40aQ9R1C7 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Prpf40aQ9R1C7 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.73■■□□□ 1.87
Prpf40aQ9R1C7 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
Prpf40aQ9R1C7 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Prpf40aQ9R1C7 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Prpf40aQ9R1C7 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC26.7■■□□□ 1.86
Prpf40aQ9R1C7 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Prpf40aQ9R1C7 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Prpf40aQ9R1C7 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC26.69■■□□□ 1.86
Prpf40aQ9R1C7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.69■■□□□ 1.86
Prpf40aQ9R1C7 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.68■■□□□ 1.86
Prpf40aQ9R1C7 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Prpf40aQ9R1C7 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Prpf40aQ9R1C7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Prpf40aQ9R1C7 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Prpf40aQ9R1C7 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Prpf40aQ9R1C7 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Prpf40aQ9R1C7 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Prpf40aQ9R1C7 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
Prpf40aQ9R1C7 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Prpf40aQ9R1C7 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms