Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
Ddx56Q9D0R4 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Ddx56Q9D0R4 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ddx56Q9D0R4 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ddx56Q9D0R4 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ddx56Q9D0R4 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC26.14■■□□□ 1.78
Ddx56Q9D0R4 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC26.14■■□□□ 1.77
Ddx56Q9D0R4 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
Ddx56Q9D0R4 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
Ddx56Q9D0R4 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Ddx56Q9D0R4 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC26.12■■□□□ 1.77
Ddx56Q9D0R4 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Ddx56Q9D0R4 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ddx56Q9D0R4 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.1■■□□□ 1.77
Ddx56Q9D0R4 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Ddx56Q9D0R4 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Ddx56Q9D0R4 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Ddx56Q9D0R4 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Ddx56Q9D0R4 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Ddx56Q9D0R4 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC26.08■■□□□ 1.77
Ddx56Q9D0R4 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Ddx56Q9D0R4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.07■■□□□ 1.76
Ddx56Q9D0R4 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.07■■□□□ 1.76
Ddx56Q9D0R4 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC26.07■■□□□ 1.76
Ddx56Q9D0R4 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC26.06■■□□□ 1.76
Ddx56Q9D0R4 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Ddx56Q9D0R4 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Ddx56Q9D0R4 Zfp131-205ENSMUST00000223812 663 ntBASIC26.05■■□□□ 1.76
Ddx56Q9D0R4 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Ddx56Q9D0R4 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Ddx56Q9D0R4 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC26.01■■□□□ 1.75
Ddx56Q9D0R4 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Ddx56Q9D0R4 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26■■□□□ 1.75
Ddx56Q9D0R4 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ddx56Q9D0R4 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ddx56Q9D0R4 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Ddx56Q9D0R4 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC25.99■■□□□ 1.75
Ddx56Q9D0R4 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Ddx56Q9D0R4 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Ddx56Q9D0R4 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Ddx56Q9D0R4 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC25.97■■□□□ 1.75
Ddx56Q9D0R4 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Ddx56Q9D0R4 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Ddx56Q9D0R4 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC25.94■■□□□ 1.74
Ddx56Q9D0R4 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Ddx56Q9D0R4 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ddx56Q9D0R4 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC25.92■■□□□ 1.74
Ddx56Q9D0R4 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ddx56Q9D0R4 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ddx56Q9D0R4 Amer2-203ENSMUST00000225247 2662 ntBASIC25.92■■□□□ 1.74
Ddx56Q9D0R4 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.92■■□□□ 1.74
Ddx56Q9D0R4 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Ddx56Q9D0R4 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Ddx56Q9D0R4 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ddx56Q9D0R4 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Ddx56Q9D0R4 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Ddx56Q9D0R4 Tdp2-203ENSMUST00000223804 1136 ntBASIC25.87■■□□□ 1.73
Ddx56Q9D0R4 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Ddx56Q9D0R4 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC25.85■■□□□ 1.73
Ddx56Q9D0R4 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC25.84■■□□□ 1.73
Ddx56Q9D0R4 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC25.84■■□□□ 1.73
Ddx56Q9D0R4 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Ddx56Q9D0R4 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Ddx56Q9D0R4 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ddx56Q9D0R4 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC25.83■■□□□ 1.73
Ddx56Q9D0R4 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC25.81■■□□□ 1.72
Ddx56Q9D0R4 Gm9397-201ENSMUST00000200125 605 ntBASIC25.81■■□□□ 1.72
Ddx56Q9D0R4 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Ddx56Q9D0R4 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC25.81■■□□□ 1.72
Ddx56Q9D0R4 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC25.81■■□□□ 1.72
Ddx56Q9D0R4 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Ddx56Q9D0R4 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Ddx56Q9D0R4 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ddx56Q9D0R4 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ddx56Q9D0R4 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ddx56Q9D0R4 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC25.78■■□□□ 1.72
Ddx56Q9D0R4 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Ddx56Q9D0R4 Gm43863-201ENSMUST00000203822 1192 ntBASIC25.78■■□□□ 1.72
Ddx56Q9D0R4 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Ddx56Q9D0R4 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Ddx56Q9D0R4 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Ddx56Q9D0R4 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC25.76■■□□□ 1.71
Ddx56Q9D0R4 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Ddx56Q9D0R4 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ddx56Q9D0R4 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC25.75■■□□□ 1.71
Ddx56Q9D0R4 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Ddx56Q9D0R4 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddx56Q9D0R4 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC25.74■■□□□ 1.71
Ddx56Q9D0R4 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
Ddx56Q9D0R4 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC25.74■■□□□ 1.71
Ddx56Q9D0R4 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Ddx56Q9D0R4 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Ddx56Q9D0R4 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC25.73■■□□□ 1.71
Ddx56Q9D0R4 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Ddx56Q9D0R4 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC25.72■■□□□ 1.71
Ddx56Q9D0R4 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Ddx56Q9D0R4 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Ddx56Q9D0R4 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC25.71■■□□□ 1.71
Ddx56Q9D0R4 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
Ddx56Q9D0R4 Gm24970-201ENSMUST00000175582 82 ntBASIC25.7■■□□□ 1.7
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms