Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
Smarca1Q6PGB8 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC27.74■■■□□ 2.03
Smarca1Q6PGB8 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Gm30346-201ENSMUST00000218641 1699 ntBASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC27.73■■■□□ 2.03
Smarca1Q6PGB8 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC27.71■■■□□ 2.03
Smarca1Q6PGB8 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
Smarca1Q6PGB8 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Smarca1Q6PGB8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Smarca1Q6PGB8 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
Smarca1Q6PGB8 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC27.69■■■□□ 2.02
Smarca1Q6PGB8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
Smarca1Q6PGB8 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Smarca1Q6PGB8 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Smarca1Q6PGB8 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
Smarca1Q6PGB8 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC27.67■■■□□ 2.02
Smarca1Q6PGB8 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
Smarca1Q6PGB8 Amer2-203ENSMUST00000225247 2662 ntBASIC27.65■■■□□ 2.02
Smarca1Q6PGB8 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Smarca1Q6PGB8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Smarca1Q6PGB8 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC27.64■■■□□ 2.02
Smarca1Q6PGB8 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.01
Smarca1Q6PGB8 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
Smarca1Q6PGB8 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC27.63■■■□□ 2.01
Smarca1Q6PGB8 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Smarca1Q6PGB8 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
Smarca1Q6PGB8 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Smarca1Q6PGB8 Gm24970-201ENSMUST00000175582 82 ntBASIC27.6■■■□□ 2.01
Smarca1Q6PGB8 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
Smarca1Q6PGB8 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC27.59■■■□□ 2.01
Smarca1Q6PGB8 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Smarca1Q6PGB8 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Smarca1Q6PGB8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC27.57■■■□□ 2
Smarca1Q6PGB8 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC27.57■■■□□ 2
Smarca1Q6PGB8 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Smarca1Q6PGB8 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC27.55■■■□□ 2
Smarca1Q6PGB8 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC27.55■■■□□ 2
Smarca1Q6PGB8 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC27.54■■■□□ 2
Smarca1Q6PGB8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Smarca1Q6PGB8 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC27.53■■■□□ 2
Smarca1Q6PGB8 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Smarca1Q6PGB8 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC27.53■■■□□ 2
Smarca1Q6PGB8 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Smarca1Q6PGB8 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
Smarca1Q6PGB8 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC27.51■■□□□ 1.99
Smarca1Q6PGB8 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Smarca1Q6PGB8 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Smarca1Q6PGB8 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC27.5■■□□□ 1.99
Smarca1Q6PGB8 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
Smarca1Q6PGB8 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
Smarca1Q6PGB8 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Smarca1Q6PGB8 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC27.48■■□□□ 1.99
Smarca1Q6PGB8 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
Smarca1Q6PGB8 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
Smarca1Q6PGB8 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
Smarca1Q6PGB8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Smarca1Q6PGB8 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
Smarca1Q6PGB8 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Smarca1Q6PGB8 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
Smarca1Q6PGB8 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
Smarca1Q6PGB8 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
Smarca1Q6PGB8 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Smarca1Q6PGB8 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
Smarca1Q6PGB8 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
Smarca1Q6PGB8 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Smarca1Q6PGB8 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC27.39■■□□□ 1.97
Smarca1Q6PGB8 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC27.38■■□□□ 1.97
Smarca1Q6PGB8 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Gm43863-201ENSMUST00000203822 1192 ntBASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Smarca1Q6PGB8 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Smarca1Q6PGB8 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
Smarca1Q6PGB8 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
Smarca1Q6PGB8 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC27.34■■□□□ 1.97
Smarca1Q6PGB8 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
Smarca1Q6PGB8 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Smarca1Q6PGB8 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC27.33■■□□□ 1.96
Smarca1Q6PGB8 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Smarca1Q6PGB8 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Smarca1Q6PGB8 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
Smarca1Q6PGB8 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC27.31■■□□□ 1.96
Smarca1Q6PGB8 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC27.3■■□□□ 1.96
Smarca1Q6PGB8 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Smarca1Q6PGB8 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
Smarca1Q6PGB8 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
Smarca1Q6PGB8 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms