Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Sox3P53784 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Sox3P53784 Gm43863-201ENSMUST00000203822 1192 ntBASIC23.45■■□□□ 1.34
Sox3P53784 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Sox3P53784 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC23.44■■□□□ 1.34
Sox3P53784 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Sox3P53784 Gm42809-201ENSMUST00000198429 1138 ntBASIC23.42■■□□□ 1.34
Sox3P53784 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Sox3P53784 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC23.41■■□□□ 1.34
Sox3P53784 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
Sox3P53784 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
Sox3P53784 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
Sox3P53784 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Sox3P53784 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.38■■□□□ 1.33
Sox3P53784 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Sox3P53784 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC23.37■■□□□ 1.33
Sox3P53784 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC23.37■■□□□ 1.33
Sox3P53784 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Sox3P53784 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC23.37■■□□□ 1.33
Sox3P53784 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
Sox3P53784 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Sox3P53784 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Sox3P53784 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Sox3P53784 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
Sox3P53784 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Sox3P53784 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC23.35■■□□□ 1.33
Sox3P53784 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Sox3P53784 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
Sox3P53784 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
Sox3P53784 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Sox3P53784 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Sox3P53784 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Sox3P53784 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Sox3P53784 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Sox3P53784 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Sox3P53784 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
Sox3P53784 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Sox3P53784 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Sox3P53784 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
Sox3P53784 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Sox3P53784 Gm7432-201ENSMUST00000210343 879 ntBASIC23.28■■□□□ 1.32
Sox3P53784 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Sox3P53784 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Sox3P53784 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Sox3P53784 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Sox3P53784 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC23.26■■□□□ 1.31
Sox3P53784 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Sox3P53784 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC23.25■■□□□ 1.31
Sox3P53784 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
Sox3P53784 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Sox3P53784 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC23.24■■□□□ 1.31
Sox3P53784 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Sox3P53784 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Sox3P53784 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Sox3P53784 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Sox3P53784 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Sox3P53784 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
Sox3P53784 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Sox3P53784 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Sox3P53784 Gm43445-201ENSMUST00000198564 2091 ntBASIC23.22■■□□□ 1.31
Sox3P53784 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
Sox3P53784 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC23.21■■□□□ 1.31
Sox3P53784 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC23.21■■□□□ 1.31
Sox3P53784 AC157572.2-201ENSMUST00000226970 908 ntBASIC23.21■■□□□ 1.31
Sox3P53784 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Sox3P53784 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Sox3P53784 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Sox3P53784 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
Sox3P53784 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Sox3P53784 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Sox3P53784 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Sox3P53784 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC23.18■■□□□ 1.3
Sox3P53784 Mir6538-201ENSMUST00000183713 110 ntBASIC23.18■■□□□ 1.3
Sox3P53784 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Sox3P53784 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
Sox3P53784 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Sox3P53784 Nkain2-201ENSMUST00000092602 558 ntBASIC23.15■■□□□ 1.3
Sox3P53784 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Sox3P53784 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Sox3P53784 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Sox3P53784 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Sox3P53784 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
Sox3P53784 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Sox3P53784 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Sox3P53784 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Sox3P53784 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Sox3P53784 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Sox3P53784 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Sox3P53784 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Sox3P53784 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC23.12■■□□□ 1.29
Sox3P53784 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Sox3P53784 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Sox3P53784 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Sox3P53784 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Sox3P53784 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Sox3P53784 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
Sox3P53784 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Sox3P53784 Gm11175-201ENSMUST00000116172 543 ntBASIC23.08■■□□□ 1.29
Sox3P53784 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
Sox3P53784 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms