Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdhgb8A0A140LI48 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdhgb8A0A140LI48 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Pcdhgb8A0A140LI48 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Pcdhgb8A0A140LI48 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Pcdhgb8A0A140LI48 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Pcdhgb8A0A140LI48 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.94■■□□□ 1.1
Pcdhgb8A0A140LI48 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Pcdhgb8A0A140LI48 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
Pcdhgb8A0A140LI48 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Pcdhgb8A0A140LI48 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
Pcdhgb8A0A140LI48 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Pcdhgb8A0A140LI48 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC21.91■■□□□ 1.1
Pcdhgb8A0A140LI48 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
Pcdhgb8A0A140LI48 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC21.91■■□□□ 1.1
Pcdhgb8A0A140LI48 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdhgb8A0A140LI48 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Pcdhgb8A0A140LI48 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdhgb8A0A140LI48 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdhgb8A0A140LI48 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdhgb8A0A140LI48 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Pcdhgb8A0A140LI48 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC21.9■■□□□ 1.1
Pcdhgb8A0A140LI48 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
Pcdhgb8A0A140LI48 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdhgb8A0A140LI48 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.88■■□□□ 1.09
Pcdhgb8A0A140LI48 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
Pcdhgb8A0A140LI48 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
Pcdhgb8A0A140LI48 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Pcdhgb8A0A140LI48 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Pcdhgb8A0A140LI48 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
Pcdhgb8A0A140LI48 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Pcdhgb8A0A140LI48 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Pcdhgb8A0A140LI48 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Pcdhgb8A0A140LI48 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Pcdhgb8A0A140LI48 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdhgb8A0A140LI48 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdhgb8A0A140LI48 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Pcdhgb8A0A140LI48 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Pcdhgb8A0A140LI48 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdhgb8A0A140LI48 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdhgb8A0A140LI48 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Pcdhgb8A0A140LI48 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Pcdhgb8A0A140LI48 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Pcdhgb8A0A140LI48 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Pcdhgb8A0A140LI48 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Pcdhgb8A0A140LI48 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdhgb8A0A140LI48 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdhgb8A0A140LI48 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdhgb8A0A140LI48 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdhgb8A0A140LI48 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdhgb8A0A140LI48 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Pcdhgb8A0A140LI48 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdhgb8A0A140LI48 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdhgb8A0A140LI48 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC21.75■■□□□ 1.07
Pcdhgb8A0A140LI48 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Pcdhgb8A0A140LI48 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdhgb8A0A140LI48 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdhgb8A0A140LI48 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Pcdhgb8A0A140LI48 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Pcdhgb8A0A140LI48 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC21.74■■□□□ 1.07
Pcdhgb8A0A140LI48 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Pcdhgb8A0A140LI48 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Pcdhgb8A0A140LI48 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Pcdhgb8A0A140LI48 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC21.71■■□□□ 1.07
Pcdhgb8A0A140LI48 Gm45855-201ENSMUST00000212546 880 ntBASIC21.7■■□□□ 1.06
Pcdhgb8A0A140LI48 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Pcdhgb8A0A140LI48 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Pcdhgb8A0A140LI48 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdhgb8A0A140LI48 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdhgb8A0A140LI48 Gm9397-201ENSMUST00000200125 605 ntBASIC21.68■■□□□ 1.06
Pcdhgb8A0A140LI48 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
Pcdhgb8A0A140LI48 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Pcdhgb8A0A140LI48 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Pcdhgb8A0A140LI48 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC21.67■■□□□ 1.06
Pcdhgb8A0A140LI48 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC21.67■■□□□ 1.06
Pcdhgb8A0A140LI48 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Pcdhgb8A0A140LI48 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC21.66■■□□□ 1.06
Pcdhgb8A0A140LI48 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Pcdhgb8A0A140LI48 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Pcdhgb8A0A140LI48 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdhgb8A0A140LI48 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Pcdhgb8A0A140LI48 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Pcdhgb8A0A140LI48 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Pcdhgb8A0A140LI48 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Pcdhgb8A0A140LI48 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Pcdhgb8A0A140LI48 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
Pcdhgb8A0A140LI48 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdhgb8A0A140LI48 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
Pcdhgb8A0A140LI48 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdhgb8A0A140LI48 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Pcdhgb8A0A140LI48 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Pcdhgb8A0A140LI48 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Pcdhgb8A0A140LI48 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Pcdhgb8A0A140LI48 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.62■■□□□ 1.05
Pcdhgb8A0A140LI48 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Pcdhgb8A0A140LI48 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pcdhgb8A0A140LI48 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC21.6■■□□□ 1.05
Pcdhgb8A0A140LI48 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdhgb8A0A140LI48 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Pcdhgb8A0A140LI48 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 55.4 ms