Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.52■□□□□ 0.72
Nkx2-4Q9EQM3 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Nkx2-4Q9EQM3 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.52■□□□□ 0.71
Nkx2-4Q9EQM3 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Nkx2-4Q9EQM3 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Gm7367-201ENSMUST00000057611 492 ntBASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Nkx2-4Q9EQM3 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Gm10459-201ENSMUST00000202708 1155 ntBASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Gm43672-201ENSMUST00000199072 1731 ntBASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.5■□□□□ 0.71
Nkx2-4Q9EQM3 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-4Q9EQM3 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-4Q9EQM3 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-4Q9EQM3 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx2-4Q9EQM3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx2-4Q9EQM3 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx2-4Q9EQM3 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx2-4Q9EQM3 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx2-4Q9EQM3 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx2-4Q9EQM3 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-4Q9EQM3 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-4Q9EQM3 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-4Q9EQM3 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 60.3 ms