Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Trbv1A0A0B4J1G7 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Trbv1A0A0B4J1G7 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Cdkn3-203ENSMUST00000227149 1952 ntBASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Dmtn-207ENSMUST00000228001 2437 ntBASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Trbv1A0A0B4J1G7 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trbv1A0A0B4J1G7 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trbv1A0A0B4J1G7 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trbv1A0A0B4J1G7 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Trbv1A0A0B4J1G7 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Trbv1A0A0B4J1G7 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Trbv1A0A0B4J1G7 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Gm9885-202ENSMUST00000186234 2209 ntBASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Gm12922-201ENSMUST00000120626 809 ntBASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Gm43702-201ENSMUST00000198772 2546 ntBASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Trbv1A0A0B4J1G7 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Trbv1A0A0B4J1G7 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms