Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Vps28Q9D1C8 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
Vps28Q9D1C8 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps28Q9D1C8 Gm26571-201ENSMUST00000181399 666 ntBASIC19.58■□□□□ 0.72
Vps28Q9D1C8 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC19.58■□□□□ 0.72
Vps28Q9D1C8 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps28Q9D1C8 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC19.58■□□□□ 0.72
Vps28Q9D1C8 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps28Q9D1C8 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.58■□□□□ 0.72
Vps28Q9D1C8 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps28Q9D1C8 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps28Q9D1C8 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Vps28Q9D1C8 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Vps28Q9D1C8 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Vps28Q9D1C8 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC19.57■□□□□ 0.72
Vps28Q9D1C8 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Gm10033-202ENSMUST00000211874 928 ntBASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.56■□□□□ 0.72
Vps28Q9D1C8 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps28Q9D1C8 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Vps28Q9D1C8 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps28Q9D1C8 Gm13234-201ENSMUST00000120010 747 ntBASIC19.55■□□□□ 0.72
Vps28Q9D1C8 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.55■□□□□ 0.72
Vps28Q9D1C8 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
Vps28Q9D1C8 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps28Q9D1C8 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps28Q9D1C8 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps28Q9D1C8 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.52■□□□□ 0.72
Vps28Q9D1C8 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC19.52■□□□□ 0.72
Vps28Q9D1C8 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC19.52■□□□□ 0.72
Vps28Q9D1C8 AV356131-201ENSMUST00000206201 750 ntBASIC19.52■□□□□ 0.72
Vps28Q9D1C8 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Vps28Q9D1C8 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Vps28Q9D1C8 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Vps28Q9D1C8 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Vps28Q9D1C8 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Vps28Q9D1C8 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Gm10849-201ENSMUST00000100397 618 ntBASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Vps28Q9D1C8 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.5■□□□□ 0.71
Vps28Q9D1C8 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Vps28Q9D1C8 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.49■□□□□ 0.71
Vps28Q9D1C8 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Vps28Q9D1C8 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Vps28Q9D1C8 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC19.48■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 136.3 ms