Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh3P13705 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh3P13705 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Msh3P13705 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Msh3P13705 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.15■□□□□ 0.98
Msh3P13705 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Msh3P13705 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Msh3P13705 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Msh3P13705 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.14■□□□□ 0.98
Msh3P13705 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Msh3P13705 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Msh3P13705 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.14■□□□□ 0.97
Msh3P13705 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Msh3P13705 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Msh3P13705 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
Msh3P13705 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Msh3P13705 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh3P13705 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
Msh3P13705 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Msh3P13705 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.13■□□□□ 0.97
Msh3P13705 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.13■□□□□ 0.97
Msh3P13705 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Msh3P13705 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.13■□□□□ 0.97
Msh3P13705 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh3P13705 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Msh3P13705 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Msh3P13705 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Msh3P13705 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 BC021767-201ENSMUST00000126387 1716 ntBASIC21.12■□□□□ 0.97
Msh3P13705 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Msh3P13705 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Msh3P13705 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Msh3P13705 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Msh3P13705 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC21.1■□□□□ 0.97
Msh3P13705 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Msh3P13705 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Msh3P13705 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Msh3P13705 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Msh3P13705 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Msh3P13705 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh3P13705 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh3P13705 Gm5784-201ENSMUST00000179344 2478 ntBASIC21.09■□□□□ 0.97
Msh3P13705 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
Msh3P13705 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Msh3P13705 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Msh3P13705 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC21.08■□□□□ 0.97
Msh3P13705 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh3P13705 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
Msh3P13705 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Msh3P13705 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.08■□□□□ 0.97
Msh3P13705 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.08■□□□□ 0.97
Msh3P13705 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh3P13705 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Msh3P13705 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Msh3P13705 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.08■□□□□ 0.97
Msh3P13705 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC21.08■□□□□ 0.97
Msh3P13705 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Msh3P13705 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Msh3P13705 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Msh3P13705 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh3P13705 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
Msh3P13705 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC21.07■□□□□ 0.96
Msh3P13705 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Msh3P13705 Gm38205-201ENSMUST00000192243 258 ntBASIC21.07■□□□□ 0.96
Msh3P13705 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Msh3P13705 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh3P13705 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh3P13705 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh3P13705 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh3P13705 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Msh3P13705 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms