Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Cdc40Q9DC48 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Cdc40Q9DC48 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC23.3■■□□□ 1.32
Cdc40Q9DC48 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Cdc40Q9DC48 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Cdc40Q9DC48 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Cdc40Q9DC48 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Cdc40Q9DC48 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC23.28■■□□□ 1.32
Cdc40Q9DC48 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC23.28■■□□□ 1.32
Cdc40Q9DC48 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Cdc40Q9DC48 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Cdc40Q9DC48 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Cdc40Q9DC48 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Cdc40Q9DC48 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Cdc40Q9DC48 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC23.24■■□□□ 1.31
Cdc40Q9DC48 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
Cdc40Q9DC48 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Cdc40Q9DC48 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cdc40Q9DC48 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cdc40Q9DC48 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Cdc40Q9DC48 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC23.2■■□□□ 1.3
Cdc40Q9DC48 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
Cdc40Q9DC48 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Cdc40Q9DC48 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Cdc40Q9DC48 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cdc40Q9DC48 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC23.18■■□□□ 1.3
Cdc40Q9DC48 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cdc40Q9DC48 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Cdc40Q9DC48 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Cdc40Q9DC48 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC23.17■■□□□ 1.3
Cdc40Q9DC48 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Cdc40Q9DC48 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC23.17■■□□□ 1.3
Cdc40Q9DC48 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
Cdc40Q9DC48 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC23.17■■□□□ 1.3
Cdc40Q9DC48 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
Cdc40Q9DC48 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Cdc40Q9DC48 AC153504.1-201ENSMUST00000218379 2290 ntBASIC23.15■■□□□ 1.3
Cdc40Q9DC48 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC23.15■■□□□ 1.3
Cdc40Q9DC48 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
Cdc40Q9DC48 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cdc40Q9DC48 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Cdc40Q9DC48 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
Cdc40Q9DC48 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cdc40Q9DC48 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Cdc40Q9DC48 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cdc40Q9DC48 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cdc40Q9DC48 Gm9397-201ENSMUST00000200125 605 ntBASIC23.11■■□□□ 1.29
Cdc40Q9DC48 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Cdc40Q9DC48 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC23.11■■□□□ 1.29
Cdc40Q9DC48 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Cdc40Q9DC48 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC23.11■■□□□ 1.29
Cdc40Q9DC48 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC23.1■■□□□ 1.29
Cdc40Q9DC48 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC23.1■■□□□ 1.29
Cdc40Q9DC48 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC23.1■■□□□ 1.29
Cdc40Q9DC48 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Cdc40Q9DC48 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cdc40Q9DC48 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Cdc40Q9DC48 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Cdc40Q9DC48 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
Cdc40Q9DC48 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Cdc40Q9DC48 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Cdc40Q9DC48 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Cdc40Q9DC48 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Cdc40Q9DC48 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC23.03■■□□□ 1.28
Cdc40Q9DC48 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Cdc40Q9DC48 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
Cdc40Q9DC48 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Cdc40Q9DC48 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Cdc40Q9DC48 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Cdc40Q9DC48 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC22.98■■□□□ 1.27
Cdc40Q9DC48 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Cdc40Q9DC48 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
Cdc40Q9DC48 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC22.95■■□□□ 1.26
Cdc40Q9DC48 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Cdc40Q9DC48 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Cdc40Q9DC48 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Cdc40Q9DC48 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Cdc40Q9DC48 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
Cdc40Q9DC48 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
Cdc40Q9DC48 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC22.92■■□□□ 1.26
Cdc40Q9DC48 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
Cdc40Q9DC48 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
Cdc40Q9DC48 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Cdc40Q9DC48 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
Cdc40Q9DC48 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
Cdc40Q9DC48 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Cdc40Q9DC48 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC22.91■■□□□ 1.26
Cdc40Q9DC48 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Cdc40Q9DC48 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
Cdc40Q9DC48 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Cdc40Q9DC48 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
Cdc40Q9DC48 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
Cdc40Q9DC48 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Cdc40Q9DC48 Gm30346-201ENSMUST00000218641 1699 ntBASIC22.9■■□□□ 1.26
Cdc40Q9DC48 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22.89■■□□□ 1.26
Cdc40Q9DC48 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Cdc40Q9DC48 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Cdc40Q9DC48 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Cdc40Q9DC48 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
Cdc40Q9DC48 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.87■■□□□ 1.25
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms